1 5' 3' | 2 5' 3' | 3 5' 3' |
...aggttttgtttttgctgcattggggaagtacagcatgctgttgagtggagtacgtttttggactgtgaaattgctcaggctatagtgttgttgtgagtagGGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGCAGCTCAGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGG
species | Physcomitrella patens |
transcript | PP1S9_414V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAAGAACAAGTTTGCAGTTGCGGTATTTGATGAGAAAGCTCGCCA GGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGCEST: gi|162270740|gb|FC446353.1|FC446353
genomic: GCAAGAACAAGTTTGCAGTTGCGGTATTTGATGAGAAAGCTCGCCAgtacgtagcc ... ttgtgagtagGGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGC
EST: TACCGCAAGAACAAGTTTGCAGTTGCGGTATTTGATGAGAAAGCTCGCCA GGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGCEST: gi|18356415|gb|BJ188474.1|BJ188474
genomic: TACCGCAAGAACAAGTTTGCAGTTGCGGTATTTGATGAGAAAGCTCGCCAgtacgtagcc ... ttgtgagtagGGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGC
EST: TACCGCAAGAACAAGTTTGCAGTTGCGGTATTTGATGAGAAAGCTCGCCA GGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGCEST: gi|18352781|gb|BJ184836.1|BJ184836
genomic: TACCGCAAGAACAAGTTTGCAGTTGCGGTATTTGATGAGAAAGCTCGCCAgtacgtagcc ... ttgtgagtagGGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGC
EST: TACCGCAAGAACAAGTTTGCAGTTGCGGTATTTGATGAGAAAGCTCGCCA GGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGCEST: gi|162270741|gb|FC446354.1|FC446354
genomic: TACCGCAAGAACAAGTTTGCAGTTGCGGTATTTGATGAGAAAGCTCGCCAgtacgtagcc ... ttgtgagtagGGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGC
EST: TACCGCAAGAACAAGTTTGCAGTTGCGGTATTTGATGAGAAAGCTCGCCA GGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGC
genomic: TACCGCAAGAACAAGTTTGCAGTTGCGGTATTTGATGAGAAAGCTCGCCAgtacgtagcc ... ttgtgagtagGGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGC
tggagtacgtttttggactgtgaaattgctcaggctatagtgttgttgtgagtagGGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGCAGCTCAGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGG
tgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggttttgtttttgctgcattggggaagtacagcatgctgttgagtggagtacgtttttggactgtgaaattgctcaggctatagtgttgttgtgagtagGGACTACCTGACTGGGTTCCGTAAGAGGAAGAACAAGAGGCGGAAAGTAGCAGCTCAGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - tgctgca