1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagttcgttttgtgtactagtttatagtttgtaaaatagaacttaaattttaattctgcgttttttggagtcattttggtttcttaatcatatgcttaagaattggttgaaatacataattgcataattcgacatgttgtatatgtcttagactgagtgatatcttgcattacagATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGATGGAAATGCCGAAGAGGGGAATGAAACGGAAGCCGAAGAATCTGAGATTG
species | Physcomitrella patens |
transcript | PP1S9_414V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGGAAAGAA ATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGATEST: gi|162270740|gb|FC446353.1|FC446353
genomic: AGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGGAAAGAAgtaagttcgt ... tgcattacagATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGAT
EST: AGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGGAAAGAA ATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGATEST: gi|18356415|gb|BJ188474.1|BJ188474
genomic: AGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGGAAAGAAgtaagttcgt ... tgcattacagATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGAT
EST: AGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGGAAAGAA ATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGATEST: gi|18352781|gb|BJ184836.1|BJ184836
genomic: AGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGGAAAGAAgtaagttcgt ... tgcattacagATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGAT
EST: AGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGGAAAGAA ATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGATEST: gi|162270741|gb|FC446354.1|FC446354
genomic: AGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGGAAAGAAgtaagttcgt ... tgcattacagATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGAT
EST: AGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGGAAAGAA ATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGAT
genomic: AGCAGAATGAAATAAAGGAAAGGCAGCGGCGGCTTCAGGAGAGGAAAGAAgtaagttcgt ... tgcattacagATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGAT
tgcataattcgacatgttgtatatgtcttagactgagtgatatcttgcattacagATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGATGGAAATGCCGAAGAGGGGAATGAAACGGAAGCCGAAGAATCTGAGATTG
ttgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcgttttgtgtactagtttatagtttgtaaaatagaacttaaattttaattctgcgttttttggagtcattttggtttcttaatcatatgcttaagaattggttgaaatacataattgcataattcgacatgttgtatatgtcttagactgagtgatatcttgcattacagATGAGAGAAGCAAAGAAAGCGGCTTTATTAGAGCAGAAGCCAAATCCAGATGGAAATGCCGAAGAGGGGAATGAAACGGAAGCCGAAGAATCTGAGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA