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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttattttcgaattctgtaatgtcaactactgtagagacagcagtgctcaagtttagcttccgatttcacccgtgtgaatatgcgttgttgataatgcagGTTTGCTGCGGCACTTGTTAGTTACCCACTGTGGGTAATGAACATCATCCCAATTACAGAGCCGGACACATTGCCCATCATATTCGACCGTGGATTGATA

Basic information

species Physcomitrella patens
transcript PP1S9_410V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162239307|gb|FC416537.1|FC416537
EST:     GACTGGAATTCTATTCGGAAGGTTATGGATATGAAGGCTGGATATGGAGG                         GTTTGCTGCGGCACTTGTTAGTTACCCATTGTGGGTAATGAACATCATCCC
genomic: GACTGGAATTCTATTCGGAAGGTTATGGATATGAAGGCTGGATATGGAGGgtaagtgcgc ... gataatgcagGTTTGCTGCGGCACTTGTTAGTTACCCACTGTGGGTAATGAACATCATCCC
EST: gi|7584081|gb|AW699979.1|AW699979
EST:     GACTGGAATTCTATTCGGAAGGTTATGGATATGAAGGCTGGATATGGAGG                         GTTTGCTGCGGCACTTGTTAGTTACCCACTGTGGGTAATGAACATCATCCC
genomic: GACTGGAATTCTATTCGGAAGGTTATGGATATGAAGGCTGGATATGGAGGgtaagtgcgc ... gataatgcagGTTTGCTGCGGCACTTGTTAGTTACCCACTGTGGGTAATGAACATCATCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcaagtttagcttccgatttcacccgtgtgaatatgcgttgttgataatgcagGTTTGCTGCGGCACTTGTTAGTTACCCACTGTGGGTAATGAACATCATCCCAATTACAGAGCCGGACACATTGCCCATCATATTCGACCGTGGATTGATA
                                         tgttgat  putative branch site (score: 4)
                                           ttgataat  TA-rich tract