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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaacttttttatgtggcgtggtttgagaaatataactttcagttggatcccagaaaggtgttgatcactgtgcaggaaattgtgcctgaatttgtgcagGAAGGACATTGTAGAACCTAATGGCACTGCCGAGGAATTCCCGGCAGGGGTCGCAGGGCCCCTCAGTTACGCTTATCATCACGGGCTCGGCAGTGATTGG

Basic information

species Physcomitrella patens
transcript PP1S9_410V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18345218|gb|BJ177259.1|BJ177259
EST:     GGCGCTGAGTTGGGTCCCGTTTTTGTTTTGCTTCTTCCTGCGAGCTTGAG                         GAAGGACATTGNAGAACCTAATGGCACTGCCGAGGAATTCCCGGCAGGGGT
genomic: GGCGCTGAGTTGGGTCCCGTTTTTGTTTTGCTTCTTCCTGCGAGCTTGAGgtgagtgctg ... atttgtgcagGAAGGACATTGTAGAACCTAATGGCACTGCCGAGGAATTCCCGGCAGGGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatcccagaaaggtgttgatcactgtgcaggaaattgtgcctgaatttgtgcagGAAGGACATTGTAGAACCTAATGGCACTGCCGAGGAATTCCCGGCAGGGGTCGCAGGGCCCCTCAGTTACGCTTATCATCACGGGCTCGGCAGTGATTGG
              tgttgat  putative branch site (score: 4)
                                aaattgt  TA-rich tract