1 5' 3' | 2 5' 3' | 3 5' 3' |
CATGAGTGCCTTGTTCCGCTCCTCGCAAATGGCGTCGGCAATGCGGTTGCGAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCTgtgagtttactcctcccccgccctccttcgtgctcctcgctctggttcatttttgggtagcctcaggagtttttgttagtttcggaagggttagtaggaa...
species | Physcomitrella patens |
transcript | PP1S9_407V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCT CTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAGEST: gi|162212573|gb|FC388965.1|FC388965
genomic: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCTgtgagtttac ... tgatctgcagCTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAG
EST: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCT CTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAGEST: gi|18336564|gb|BJ168586.1|BJ168586
genomic: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCTgtgagtttac ... tgatctgcagCTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAG
EST: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCT CTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAGEST: gi|162222424|gb|FC398003.1|FC398003
genomic: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCTgtgagtttac ... tgatctgcagCTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAG
EST: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCT CTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAGEST: gi|67717671|gb|BJ967930.1|BJ967930
genomic: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCTgtgagtttac ... tgatctgcagCTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAG
EST: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCT CTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAGEST: gi|162249308|gb|FC424823.1|FC424823
genomic: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCTgtgagtttac ... tgatctgcagCTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAG
EST: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCT CTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAGEST: gi|37823262|gb|BJ581328.1|BJ581328
genomic: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCTgtgagtttac ... tgatctgcagCTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAG
EST: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCT CTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAG
genomic: GAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCTgtgagtttac ... tgatctgcagCTTCCTGAGAACGCAGAGCTTATTTGGGACGATGGAAGTCCGTTCCCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGAGTGCCTTGTTCCGCTCCTCGCAAATGGCGTCGGCAATGCGGTTGCGAGCAGGCGCTGGTTTGCCCGTAGGTAGCATGGAAGTTCCTGCTCATCCTgtgagtttactcctcccccgccctccttcgtgctcctcgctctggttcatttttgggtagcctcaggagtttttgttagtttcggaagggttagtaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG