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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgaattatacttggcatggaaaccccgttctatgcattgctgcacaatcatgttcattggtcatttcttaagtgtatccttcaccatcaaaccgcagagtcgctgaatttgacaatttgtcttaatttttgtgtgacgcagATAACAACTAGTGTGTTGATGGTTGGATCGCTGGGCTTGAGCATGTATACAAGCCCTATCCGCACCGGCGGCAACACTCTGGGCACCACTCATATTGGTC

Basic information

species Physcomitrella patens
transcript PP1S9_402V6.1
intron # 5
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaaccgcagagtcgctgaatttgacaatttgtcttaatttttgtgtgacgcagATAACAACTAGTGTGTTGATGGTTGGATCGCTGGGCTTGAGCATGTATACAAGCCCTATCCGCACCGGCGGCAACACTCTGGGCACCACTCATATTGGTC
                                 tcttaat  putative branch site (score: 3)
                                       tttttgt  CT-rich tract
                           aatttgtcttaatttt  TA-rich tract