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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGCTGGGGCATCGCTGAGGTGCCGCAAATTCTCACGAACTTCCGGGAGAAGTCCACCGAGGGCCTTTCGTTGCTCTTTCTCATGACGTGGGTTGTGGGgtaagtttgtttctttcgttgaaaattcaccgattttttacaaggtcactgtgatcgggagcaactaaatcttcatataattcgcgaattgaagcaacta...

Basic information

species Physcomitrella patens
transcript PP1S9_402V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S9_402V6.2 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ14016 (Selaginella moellendorffii), 5'ss of exon 1
TAAGCTGGGGCATCGCTGAGGTGCCGCAAATTCTCACGAACTTCCGGGAGAAGTCCACCGAGGGCCTTTCGTTGCTCTTTCTCATGACGTGGGTTGTGGGgtaagtttgtttctttcgttgaaaattcaccgattttttacaaggtc-actgtg---atcg-ggagcaactaaatcttcatataatt--cgcgaattgaagcaacta---------------------------------------------------------------------------------
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TGAGCTGGGGCATTGCCGAGGTGCCCCAGATCATCACGAATTACAAGGAGAAATCCACCGAGGGTGTCTCGCTTCTCTTTCTCATGACTTGGGTCGTTGGgtaagcc-attcctttcgttctctcctctctttttctctttggttcccagtgtggagatggtggagagattctatctttgttttcttgctgccggttctctcatttaatgcatcgcttgctttctcctcgatcgtgtgtgcttggattggatcaaacgcattaactctcccatcttatactcgtgaag