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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttcctctccccatcttcaatgttaataagcttaggtctttcagggttcattcagattctatttatcaaacttagaccccaaacagaattctgtatggtgaaatgaatgttgtcgtttattaacaagctttgtgctgtaatgactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCCCTTGTGGCTTTATGGTTCTCCTCCACCATCGTAGGAGCCATCAACTCCG

Basic information

species Physcomitrella patens
transcript PP1S9_38V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162200057|gb|FC376519.1|FC376519
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162228259|gb|FC404975.1|FC404975
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162230687|gb|FC406110.1|FC406110
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162253179|gb|FC429115.1|FC429115
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|67726697|gb|BJ976956.1|BJ976956
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAGGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|18326637|gb|BJ158636.1|BJ158636
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|18367121|gb|BJ199201.1|BJ199201
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162215829|gb|FC390894.1|FC390894
EST:     CAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: CAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162250191|gb|FC427916.1|FC427916
EST:     GCGACAGCTTTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162254153|gb|FC429677.1|FC429677
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162228258|gb|FC404974.1|FC404974
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|18336491|gb|BJ168513.1|BJ168513
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|67693141|gb|BJ953374.1|BJ953374
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162253178|gb|FC429114.1|FC429114
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|67721579|gb|BJ971838.1|BJ971838
EST:     ACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: ACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162228534|gb|FC405276.1|FC405276
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|19781817|gb|BQ039776.1|BQ039776
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|67704728|gb|BJ964961.1|BJ964961
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162229604|gb|FC404872.1|FC404872
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|67718211|gb|BJ968470.1|BJ968470
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAGGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162247388|gb|FC423108.1|FC423108
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162250192|gb|FC427917.1|FC427917
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162209234|gb|FC385154.1|FC385154
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|18334719|gb|BJ166736.1|BJ166736
EST:     CTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGNAGGTGCC
genomic: CTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|37847569|gb|BJ605577.1|BJ605577
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162214800|gb|FC390935.1|FC390935
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162228533|gb|FC405275.1|FC405275
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162206708|gb|FC383181.1|FC383181
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|67703343|gb|BJ963576.1|BJ963576
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCA
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCA
EST: gi|162254152|gb|FC429676.1|FC429676
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|208345198|gb|DC925468.1|DC925468
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162234989|gb|FC411776.1|FC411776
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162212560|gb|FC388536.1|FC388536
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|208379792|gb|DC911677.1|DC911677
EST:     GCGACAGCTCTGCTCAAATCNAAAAATTCNTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162274315|gb|FC450283.1|FC450283
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162252610|gb|FC428641.1|FC428641
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162228306|gb|FC405204.1|FC405204
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162274316|gb|FC450284.1|FC450284
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|18328251|gb|BJ160255.1|BJ160255
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162229603|gb|FC404871.1|FC404871
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|18326733|gb|BJ158732.1|BJ158732
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162252609|gb|FC428640.1|FC428640
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162191587|gb|FC367632.1|FC367632
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162224883|gb|FC401091.1|FC401091
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162230686|gb|FC406109.1|FC406109
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162191588|gb|FC367633.1|FC367633
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162212559|gb|FC388535.1|FC388535
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
EST: gi|162206707|gb|FC383180.1|FC383180
EST:     GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG                         TGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC
genomic: GCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 108

AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAGgtcagttcct ... gactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCCCTTGTGGCTTTATGGTTCTCCTCCACCATCGTAGGAGCCATCAACTCCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgaaatgaatgttgtcgtttattaacaagctttgtgctgtaatgactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCCCTTGTGGCTTTATGGTTCTCCTCCACCATCGTAGGAGCCATCAACTCCG
                     tattaac  putative branch site (score: 108)
                   tttattaacaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagttcctctccccatcttcaatgttaataagcttaggtctttcagggttcattcagattctatttatcaaacttagaccccaaacagaattctgtatggtgaaatgaatgttgtcgtttattaacaagctttgtgctgtaatgactgaacagTGGGACCAGACTGAGAACAAAACCACCGTCGTAGTTTACGCCGGAGGTGCCCTTGTGGCTTTATGGTTCTCCTCCACCATCGTAGGAGCCATCAACTCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC