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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTCCACGACGAGGTCGACCCAGAGAGTGTCGGCGTCGTTGTCACTCAGGAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgcaatgtcttcattgagagaagtaaaacgtggtaaaactccaattgggtagagttatttcgcgtgttggagttatggtggcggttgctttgtt...

Basic information

species Physcomitrella patens
transcript PP1S9_38V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162200057|gb|FC376519.1|FC376519
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162228259|gb|FC404975.1|FC404975
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162230687|gb|FC406110.1|FC406110
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162253179|gb|FC429115.1|FC429115
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|67726697|gb|BJ976956.1|BJ976956
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|18326637|gb|BJ158636.1|BJ158636
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|18367121|gb|BJ199201.1|BJ199201
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162250191|gb|FC427916.1|FC427916
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTTTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162254153|gb|FC429677.1|FC429677
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162228258|gb|FC404974.1|FC404974
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|18336491|gb|BJ168513.1|BJ168513
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|67693141|gb|BJ953374.1|BJ953374
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162253178|gb|FC429114.1|FC429114
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162228534|gb|FC405276.1|FC405276
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|19781817|gb|BQ039776.1|BQ039776
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|67704728|gb|BJ964961.1|BJ964961
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162229604|gb|FC404872.1|FC404872
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|67718211|gb|BJ968470.1|BJ968470
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162247388|gb|FC423108.1|FC423108
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162250192|gb|FC427917.1|FC427917
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162209234|gb|FC385154.1|FC385154
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTCCTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|37847569|gb|BJ605577.1|BJ605577
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162214800|gb|FC390935.1|FC390935
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162228533|gb|FC405275.1|FC405275
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162206708|gb|FC383181.1|FC383181
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|67703343|gb|BJ963576.1|BJ963576
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162254152|gb|FC429676.1|FC429676
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|208345198|gb|DC925468.1|DC925468
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162234989|gb|FC411776.1|FC411776
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162212560|gb|FC388536.1|FC388536
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162274315|gb|FC450283.1|FC450283
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGAAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162252610|gb|FC428641.1|FC428641
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162228306|gb|FC405204.1|FC405204
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162274316|gb|FC450284.1|FC450284
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|18328251|gb|BJ160255.1|BJ160255
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162229603|gb|FC404871.1|FC404871
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|18326733|gb|BJ158732.1|BJ158732
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162252609|gb|FC428640.1|FC428640
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTTTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162191587|gb|FC367632.1|FC367632
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162224883|gb|FC401091.1|FC401091
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162230686|gb|FC406109.1|FC406109
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162191588|gb|FC367633.1|FC367633
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162212559|gb|FC388535.1|FC388535
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|162206707|gb|FC383180.1|FC383180
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
EST: gi|67703071|gb|BJ963304.1|BJ963304
EST:     GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAG                         AGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA
genomic: GAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 142

TCGTCCACGACGAGGTCGACCCAGAGAGTGTCGGCGTCGTTGTCACTCAGGAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgca ... aatcctgcagAGTCCAAGAAGTTCAATCCTCTGCGCGTCAGGGCTACCGCCGACAGCGACAGCTCTGCTCAAATCCAAGAATTCGTCGAAGACCTCAAGGCCAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGTCCACGACGAGGTCGACCCAGAGAGTGTCGGCGTCGTTGTCACTCAGGAGGAGCCTCGTGCATGGCAACAAGGTGGTGTTGACCGCAAGGAAAGCAGgtgagttgcaatgtcttcattgagagaagtaaaacgtggtaaaactccaattgggtagagttatttcgcgtgttggagttatggtggcggttgctttgtt

- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaaa