1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctcggaggttcgagcaattcggtatcttagagggttccacacaaagtttttaaatgtttttttcattggggatgttttattttatatgatttgtgatcagGTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGCCGGTGGTTGCGGAAAACCTGCTGGAGGCTGTTGTCCTCACCCCCATGGT
species | Physcomitrella patens |
transcript | PP1S9_386V6.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAG GTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGCEST: gi|67718484|gb|BJ968743.1|BJ968743
genomic: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAGgtagcgtagt ... ttgtgatcagGTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGC
EST: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAG GTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGCEST: gi|67702635|gb|BJ962868.1|BJ962868
genomic: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAGgtagcgtagt ... ttgtgatcagGTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGC
EST: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAG GTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGCEST: gi|67702204|gb|BJ962437.1|BJ962437
genomic: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAGgtagcgtagt ... ttgtgatcagGTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGC
EST: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAG GTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGCEST: gi|67704132|gb|BJ964365.1|BJ964365
genomic: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAGgtagcgtagt ... ttgtgatcagGTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGC
EST: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAG GTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGCEST: gi|67702495|gb|BJ962728.1|BJ962728
genomic: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAGgtagcgtagt ... ttgtgatcagGTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGC
EST: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAG GTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGCEST: gi|18353366|gb|BJ185421.1|BJ185421
genomic: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAGgtagcgtagt ... ttgtgatcagGTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGC
EST: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAG GTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGCEST: gi|18352940|gb|BJ184995.1|BJ184995
genomic: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAGgtagcgtagt ... ttgtgatcagGTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGC
EST: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCNGGACTTCCTGGAGAG GTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGCEST: gi|18359430|gb|BJ191491.1|BJ191491
genomic: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAGgtagcgtagt ... ttgtgatcagGTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGC
EST: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAG GTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGC
genomic: GCGATGCTGGCCACTCCGGCGCTTCGATTCTTTCGGGACTTCCTGGAGAGgtagcgtagt ... ttgtgatcagGTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGC
gtttttaaatgtttttttcattggggatgttttattttatatgatttgtgatcagGTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGCCGGTGGTTGCGGAAAACCTGCTGGAGGCTGTTGTCCTCACCCCCATGGT
atgttttattttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcggaggttcgagcaattcggtatcttagagggttccacacaaagtttttaaatgtttttttcattggggatgttttattttatatgatttgtgatcagGTTTGGAGCGACTCTGCCGTCAGTTGCGTATGCGGAGGAAGCCAAATCTGCCGGTGGTTGCGGAAAACCTGCTGGAGGCTGTTGTCCTCACCCCCATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT