1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatctttacgtcatgactgcagcatcaaagttgattttaaaatgaccttatgaaggcttatttacagttcctcttatacagggccagtcgatcaattgacgttctgtaacatttctatgctctctccctgtcgtatatctagGTTGAGCCAAATGCGCACAAAATTGAAGAACACCGAAGGAAGTACGACCGTTTGCGGAAAGAGCGCAATGAAAAAAGAGCGGCTCGGGAAAGGGAACAAC
species | Physcomitrella patens |
transcript | PP1S9_386V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGCATGTCGACTTGACTATGATGAGGGGACTGCCCAGGTTCTTAAAAAG GTTGAGCCAAATGCGCACEST: gi|162168430|gb|FC344107.1|FC344107
genomic: TGGCATGTCGACTTGACTATGATGAGGGGACTGCCCAGGTTCTTAAAAAGgtatctttac ... gtatatctagGTTGAGCCAAATGCGCAC
EST: TGGCATGTCGACTTGACTATGATGAGGGGACTGCCCAGGTTCTTAAAAAG GTTGAGCCAAATGCGCACAAAATTGAAGAACACCGAAGGAAGTACGACCGT
genomic: TGGCATGTCGACTTGACTATGATGAGGGGACTGCCCAGGTTCTTAAAAAGgtatctttac ... gtatatctagGTTGAGCCAAATGCGCACAAAATTGAAGAACACCGAAGGAAGTACGACCGT
tcgatcaattgacgttctgtaacatttctatgctctctccctgtcgtatatctagGTTGAGCCAAATGCGCACAAAATTGAAGAACACCGAAGGAAGTACGACCGTTTGCGGAAAGAGCGCAATGAAAAAAGAGCGGCTCGGGAAAGGGAACAAC
ctgtaac putative branch site (score: 13)
ctctctccctgtcgt putative PPT
taacattt TA-rich tract