1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTGGTGTATACGTTAAAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgagaagataaatgtcgtggttccttttgatgctttgaatgcctcaaatctctttctagtttcctttgtttgctggctcctgaatcgtgtatac...
species | Physcomitrella patens |
transcript | PP1S9_386V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCAEST: gi|100399659|gb|BY972829.1|BY972829
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
EST: AATGAAGAAGCCCGAATGCTGGAATTAGAGACGCTGATGCTGCTATCAGG ATTAACCCAGACTCTGCAAAAGEST: gi|22492231|gb|BU052154.1|BU052154
genomic: AATGAAGAAGCC-GAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAG
EST: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCAEST: gi|208347568|gb|DC912827.1|DC912827
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
EST: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAAAG-TTACA-GTGCANANGTGAG-CCAAAGCAEST: gi|67717655|gb|BJ967914.1|BJ967914
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
EST: AAATGAAGAAGCCGAATGCTGCAATTANAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAEST: gi|100416732|gb|BY993060.1|BY993060
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAA
EST: AATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATNCA-G ATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCEST: gi|100446593|gb|CJ970892.1|CJ970892
genomic: AATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTAT-CAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGC
EST: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAAAGGTTACCAGTGCAGAGGTEST: gi|162164761|gb|FC340483.1|FC340483
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGT
EST: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCAEST: gi|208373792|gb|DC936577.1|DC936577
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
EST: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCNAAGCAEST: gi|208349326|gb|DC910385.1|DC910385
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
EST: AAATGAAGAAGCCGAATGCTGCAATTANAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAANG-TTACAAGTGCAEST: gi|67719577|gb|BJ969836.1|BJ969836
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCA
EST: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAEST: gi|67717904|gb|BJ968163.1|BJ968163
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGA
EST: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCNAAGCAEST: gi|100393447|gb|BY953403.1|BY953403
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
EST: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAAAGGT-ACAAGTGCAGAGGTGAGGGCAAAGCAEST: gi|162249194|gb|FC421537.1|FC421537
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
EST: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCNAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCAEST: gi|208358732|gb|DC942926.1|DC942926
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
EST: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGANGTGAGNCNAA-GCAEST: gi|100401417|gb|BY990992.1|BY990992
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
EST: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCAEST: gi|208368260|gb|DC935643.1|DC935643
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
EST: AAATGAAGAAGCCGAATGCTGCAATTANAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAANG-TTACAAGTGCANANGTGAGGCCAA-GCAEST: gi|162168430|gb|FC344107.1|FC344107
genomic: AAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
EST: AAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAG ATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
genomic: AAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgag ... catctaacagATTAACCCAGACTCTGCAAAAGGTTACAAGTGCAGAGGTGAGGCCAAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGTGTATACGTTAAAATGAAGAAGCCGAATGCTGCAATTAGAGACGCTGATGCTGCTATCAAGgtgacttgagaagataaatgtcgtggttccttttgatgctttgaatgcctcaaatctctttctagtttcctttgtttgctggctcctgaatcgtgtatac
- - - - - - - - - TGAAGA
- - - - - - - - - - AAGAAG
- - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT