1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgatgtatgtatgtatataccgaaagagagagggagggagtcgctacaccaatgcatcttggtcgctgaaacgaactgatctttgactgtgcgcctacagGTTCTGGCTTTGTTGTACTACGTCATCTCATACTTCCCTGGAGGGTCAGCAGGCCTGCAATTCATAACTTCTTTCTTCACATCTGCAGTCATGAAATGTT
species | Physcomitrella patens |
transcript | PP1S9_382V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGATGGTTCTCCACAGCTACATCTTTTCGGTGTTTTTCTCCGGCATCCAG GTTCTGGCTTTGTTGTACTACGTCATCTCATACTTCCCTGGAGGGTCAGCAEST: gi|208371599|gb|DC952241.1|DC952241
genomic: CGATGGTTCTCCACAGCTACATCTTTTCGGTGTTTTTCTCCGGCATCCAGgtcagaacat ... gcgcctacagGTTCTGGCTTTGTTGTACTACGTCATCTCATACTTCCCTGGAGGGTCAGCA
EST: CGATGGTTCTCCACAGCTACATCTTTTCGGTGTTTTTCTCCGGCATCCAG GTTCTGGCTTTGTTGTACTACGTCATCTCATACTTCCCTGGAGGGTCAGCAEST: gi|162153768|gb|FC329171.1|FC329171
genomic: CGATGGTTCTCCACAGCTACATCTTTTCGGTGTTTTTCTCCGGCATCCAGgtcagaacat ... gcgcctacagGTTCTGGCTTTGTTGTACTACGTCATCTCATACTTCCCTGGAGGGTCAGCA
EST: CGATGGTTCTCCACAGCTACATCTTTTCGGTGTTTTTCTCCGGCATCCAG GTTCTGGCTTTGTTGTACTACGTCATCTCATACTTCCCTGGAGGGTCAGCA
genomic: CGATGGTTCTCCACAGCTACATCTTTTCGGTGTTTTTCTCCGGCATCCAGgtcagaacat ... gcgcctacagGTTCTGGCTTTGTTGTACTACGTCATCTCATACTTCCCTGGAGGGTCAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgatgtatgtatgtatataccgaaagagagagggagggagtcgctacaccaatgcatcttggtcgctgaaacgaactgatctttgactgtgcgcctacagGTTCTGGCTTTGTTGTACTACGTCATCTCATACTTCCCTGGAGGGTCAGCAGGCCTGCAATTCATAACTTCTTTCTTCACATCTGCAGTCATGAAATGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG