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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagttctttcagactctgcttttgaagttagtagtacgtattcatattcttctttggtacgaacaacgctttgtaatcaatgcaattattcggggtattgcagAGGCTGCCTTTTACCCTGGGGTTTCTTGGAAGTATGTGTGCAACTCTGTACGCTTCGATGGTTCTCCACAGCTACATCTTTTCGGTGTTTTTCTCCGGCA

Basic information

species Physcomitrella patens
transcript PP1S9_382V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162260484|gb|FC436111.1|FC436111
EST:     TCGCGCTTAAGGGTCCGAAGTCCCAAGCCCTTCATATGATCTCCAAAGAG                         AGGCTGCCTTTTACCCTGGGGTTTCTTGGAAGTATGTGTGCAACTCTGTAC
genomic: TCGCGCTTAAGGGTCCGAAGTCCCAAGCCCTTCATATGATCTCCAAAGAGgtaagagttc ... ggtattgcagAGGCTGCCTTTTACCCTGGGGTTTCTTGGAAGTATGTGTGCAACTCTGTAC
EST: gi|208371599|gb|DC952241.1|DC952241
EST:     TCGCGCTTAAGGGTCCGAAGTCCCAAGCCCTTCATATGATCTCCAAAGAG                         AGGCTGCCTTTTACCCTGGGGTTTCTTGGAAGTATGTGTGCAACTCTGTAC
genomic: TCGCGCTTAAGGGTCCGAAGTCCCAAGCCCTTCATATGATCTCCAAAGAGgtaagagttc ... ggtattgcagAGGCTGCCTTTTACCCTGGGGTTTCTTGGAAGTATGTGTGCAACTCTGTAC
EST: gi|162153768|gb|FC329171.1|FC329171
EST:     TCGCGCTTAAGGGTCCGAAGTCCCAAGCCCTTCATATGATCTCCAAAGAG                         AGGCTGCCTTTTACCCTGGGGTTTCTTGGAAGTATGTGTGCAACTCTGTAC
genomic: TCGCGCTTAAGGGTCCGAAGTCCCAAGCCCTTCATATGATCTCCAAAGAGgtaagagttc ... ggtattgcagAGGCTGCCTTTTACCCTGGGGTTTCTTGGAAGTATGTGTGCAACTCTGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctttggtacgaacaacgctttgtaatcaatgcaattattcggggtattgcagAGGCTGCCTTTTACCCTGGGGTTTCTTGGAAGTATGTGTGCAACTCTGTACGCTTCGATGGTTCTCCACAGCTACATCTTTTCGGTGTTTTTCTCCGGCA
                                   aattatt  TA-rich tract