1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAAACACTCAGGAGCTGAAATGACCAGTATGGAGTGGATTGCGCGACTGCAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtccaaatctgcagtgaaaacagatgttgtgtttcagtttttatttcgtaaattgtaaaggacacggttgtatgcttgttgtgtcctcgttacgg...
species | Physcomitrella patens |
transcript | PP1S9_37V6.5 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|18333102|gb|BJ165116.1|BJ165116
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|18333102|gb|BJ165116.1|BJ165116
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|18333102|gb|BJ165116.1|BJ165116
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|208383754|gb|DC928057.1|DC928057
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|208383754|gb|DC928057.1|DC928057
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|208383754|gb|DC928057.1|DC928057
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|208383754|gb|DC928057.1|DC928057
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|208350152|gb|DC926107.1|DC926107
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|208350152|gb|DC926107.1|DC926107
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|208350152|gb|DC926107.1|DC926107
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|208350152|gb|DC926107.1|DC926107
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|67693428|gb|BJ953661.1|BJ953661
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG ACGTCGTGCATTATTGAGGAAAATGTCCCGGGCCCATATTGTTAAGGCCGAEST: gi|208378446|gb|DC923082.1|DC923082
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccagACGTCGTGCATTATTGAGGAAAATGTCCCGGGCCCATATTGTTAAGGCCGA
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|208378446|gb|DC923082.1|DC923082
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|208378446|gb|DC923082.1|DC923082
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG GEST: gi|208378446|gb|DC923082.1|DC923082
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
EST: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATG G
genomic: CAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtcca ... tgtaggccag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAACACTCAGGAGCTGAAATGACCAGTATGGAGTGGATTGCGCGACTGCAAAGAAGAAGATTTCTATGTCGGGTGCTACGTCCGCTGGGTTTTATATGgtaatgtccaaatctgcagtgaaaacagatgttgtgtttcagtttttatttcgtaaattgtaaaggacacggttgtatgcttgttgtgtcctcgttacgg
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaga