1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taattagtgtagcattgagtatgtcacagttccagtagggtttgtgttggtcgtggtggattgcctcctgatcgtattgttgttaggatcttggtcgcagATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG
species | Physcomitrella patens |
transcript | PP1S9_37V6.5 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC ATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTEST: gi|162196408|gb|FC373554.1|FC373554
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttggtcgcagATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGT
EST: CTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC ATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTEST: gi|100452754|gb|CJ975427.1|CJ975427
genomic: CTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttggtcgcagATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGT
EST: CTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC ATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTEST: gi|208356450|gb|DC914312.1|DC914312
genomic: -TTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttggtcgcagATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGT
EST: AATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC ATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTEST: gi|208398405|gb|DC912334.1|DC912334
genomic: AATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttggtcgcagATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGT
EST: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC ATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTEST: gi|100404598|gb|BY973658.1|BY973658
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttggtcgcagATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGT
EST: CTTAGAATCCCCCTTTCGTTACTTGTTCAC ATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGT
genomic: CTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttggtcgcagATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGT
gttggtcgtggtggattgcctcctgatcgtattgttgttaggatcttggtcgcagATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG
tcctgat putative branch site (score: 1)
tattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattagtgtagcattgagtatgtcacagttccagtagggtttgtgttggtcgtggtggattgcctcctgatcgtattgttgttaggatcttggtcgcagATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG