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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAAGGGGCTGCAACACATCGCCATCGCTGTTCCGGATCTTTCAGTTGCAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcgaaccctcagccttttcttcctatgtcctcttttcgtctgtaataatgtcggaattgccaaacgtagccgatgaagaggtgtccatgggaccattgctgatcaagaatcttgcttattcataaaatcttattgtttatgcgtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S9_16V6.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162245346|gb|FC423016.1|FC423016
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|162254334|gb|FC430469.1|FC430469
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|67719288|gb|BJ969547.1|BJ969547
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|7067293|gb|AW497148.1|AW497148
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100451902|gb|CJ974999.1|CJ974999
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|161979081|gb|EE296290.1|EE296290
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|18344184|gb|BJ176223.1|BJ176223
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|18372598|gb|BJ204200.1|BJ204200
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|162161109|gb|FC336457.1|FC336457
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|162206596|gb|FC382354.1|FC382354
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|208348623|gb|DC905860.1|DC905860
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|162231984|gb|FC409058.1|FC409058
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|18329678|gb|BJ161684.1|BJ161684
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGT
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGT
EST: gi|100371234|gb|BY986004.1|BY986004
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGGTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100384389|gb|BY969520.1|BY969520
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|208358492|gb|DC930624.1|DC930624
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100361217|gb|BY946972.1|BY946972
EST:     CAGCCGAGCGTTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|18358259|gb|BJ190318.1|BJ190318
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAAGTTTTTGTTCAATTGCCGAATGT
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAA-GTTTTTGTTCAATTGCCGAATGT
EST: gi|162222955|gb|FC399612.1|FC399612
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|162241531|gb|FC414679.1|FC414679
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100386386|gb|BY988053.1|BY988053
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|18325012|gb|BJ157008.1|BJ157008
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|162249732|gb|FC425611.1|FC425611
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|18327897|gb|BJ159901.1|BJ159901
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|18366085|gb|BJ198163.1|BJ198163
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100397059|gb|BY953964.1|BY953964
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100375769|gb|BY968182.1|BY968182
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100361088|gb|BY946908.1|BY946908
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100358133|gb|BY965489.1|BY965489
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100424206|gb|BY958368.1|BY958368
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|162210861|gb|FC387271.1|FC387271
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|162184692|gb|FC361930.1|FC361930
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|18361369|gb|BJ193435.1|BJ193435
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100355422|gb|BY945926.1|BY945926
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|18362884|gb|BJ194956.1|BJ194956
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|208353524|gb|DC938717.1|DC938717
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|162167479|gb|FC344196.1|FC344196
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100385820|gb|BY951014.1|BY951014
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100365734|gb|BY948385.1|BY948385
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100446199|gb|CJ970498.1|CJ970498
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100371594|gb|BY968056.1|BY968056
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100427839|gb|BY959151.1|BY959151
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTTGCCGAATGT
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATT-GCCGAATGT
EST: gi|18374583|gb|BJ206161.1|BJ206161
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100451910|gb|CJ975004.1|CJ975004
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCG--                         -ATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|100427726|gb|BY977642.1|BY977642
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 29 (upstream exon), 35 (downstream exon)
Score: 29

AGTGAAGGGGCTGCAACACATCGCCATCGCTGTTCCGGATCTTTCAGTTGCAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTATGCATTGAGCTTTTACATCCCATGGGACAGGACGGCCCAGTTGCTGAAT




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