Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTCGTCTCGGTTTTGACGCACCGGTGTAAAGTAGTACCGCCTTGTTAGAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttctgtagaaggttaaggtcggcgagctttgcattggattctttcccaaggttcaggttctggttcttctgtgcttttgtgcgttaggggctg...

Basic information

species Physcomitrella patens
transcript PP1S9_16V6.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162245346|gb|FC423016.1|FC423016
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|162254334|gb|FC430469.1|FC430469
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|67719288|gb|BJ969547.1|BJ969547
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTACCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100451902|gb|CJ974999.1|CJ974999
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|161979081|gb|EE296290.1|EE296290
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGNCTGCCCGACATGCC
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTG-CTGCCCGACATGCC
EST: gi|18344184|gb|BJ176223.1|BJ176223
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|18372598|gb|BJ204200.1|BJ204200
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|162161109|gb|FC336457.1|FC336457
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|208348623|gb|DC905860.1|DC905860
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|18329678|gb|BJ161684.1|BJ161684
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100371234|gb|BY986004.1|BY986004
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100384389|gb|BY969520.1|BY969520
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|208358492|gb|DC930624.1|DC930624
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100361217|gb|BY946972.1|BY946972
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|18358259|gb|BJ190318.1|BJ190318
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|162222955|gb|FC399612.1|FC399612
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|162241531|gb|FC414679.1|FC414679
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100386386|gb|BY988053.1|BY988053
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|18325012|gb|BJ157008.1|BJ157008
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|162249732|gb|FC425611.1|FC425611
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|18327897|gb|BJ159901.1|BJ159901
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|18366085|gb|BJ198163.1|BJ198163
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100397059|gb|BY953964.1|BY953964
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100375769|gb|BY968182.1|BY968182
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100361088|gb|BY946908.1|BY946908
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100358133|gb|BY965489.1|BY965489
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100424206|gb|BY958368.1|BY958368
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|162210861|gb|FC387271.1|FC387271
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|162184692|gb|FC361930.1|FC361930
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|18361369|gb|BJ193435.1|BJ193435
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100355422|gb|BY945926.1|BY945926
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|18362884|gb|BJ194956.1|BJ194956
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|208353524|gb|DC938717.1|DC938717
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|162167479|gb|FC344196.1|FC344196
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100385820|gb|BY951014.1|BY951014
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100365734|gb|BY948385.1|BY948385
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100446199|gb|CJ970498.1|CJ970498
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100371594|gb|BY968056.1|BY968056
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100427839|gb|BY959151.1|BY959151
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100451910|gb|CJ975004.1|CJ975004
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
EST: gi|100427726|gb|BY977642.1|BY977642
EST:     GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAG                         ACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA
genomic: GAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 66

GGATTCGTCTCGGTTTTGACGCACCGGTGTAAAGTAGTACCGCCTTGTTAGAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttc ... ttggattcagACATGGCCGGAGTTCTTCGACGAGCGATTTACCCTGCTGCCCGACATGCCATAACCGAAATCTCACGTCCAATTGCGTTCCGGGCTTCTCAAGCAATGAC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATTCGTCTCGGTTTTGACGCACCGGTGTAAAGTAGTACCGCCTTGTTAGAGCTTCGATTCGAGTGGTGAACCTCCAGACTCGATTAGAAGTTTCGAAGgtgaggtttctgtagaaggttaaggtcggcgagctttgcattggattctttcccaaggttcaggttctggttcttctgtgcttttgtgcgttaggggctg

- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT