1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAGgtatgtctttcagcacatcgttcttacattccatgttcaaattcacttcgatgatacatccagcataactccagttacttttaagcatgtcaactctcagactagtctttactttctttctttttctccacttttggttgtcacagttgccacgtgctgcag
species | Physcomitrella patens |
transcript | PP1S9_162V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAG GTTGTGGAGGAGAATGAGACTTTGCTTTCTTTCGCATTTTTTCTCAAGAAGEST: gi|67725795|gb|BJ976054.1|BJ976054
genomic: GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAGgtatgtcttt ... cgtgctgcagGTTGTGGAGGAGAATGAGACTTTGCTTTCTTTCGCATTTTTTCTCAAGAAG
EST: GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAG GTTGTGGAGGAGAATGAGACTTTGCTTTCTTTCGCATTTTTTCTCAAGAAGEST: gi|67724351|gb|BJ974610.1|BJ974610
genomic: GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAGgtatgtcttt ... cgtgctgcagGTTGTGGAGGAGAATGAGACTTTGCTTTCTTTCGCATTTTTTCTCAAGAAG
EST: GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAG GTTGTGGAGGAGAATGAGACTTTGCTTTCTTTCGCATTTTTTCTCAAGAAGEST: gi|208358608|gb|DC949943.1|DC949943
genomic: GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAGgtatgtcttt ... cgtgctgcagGTTGTGGAGGAGAATGAGACTTTGCTTTCTTTCGCATTTTTTCTCAAGAAG
EST: GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAG GTTGTGGAGGAGAATGAGACTTTGCTTTCTTTCGCATTTTTTCTCAAGAAGEST: gi|208353685|gb|DC949761.1|DC949761
genomic: GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAGgtatgtcttt ... cgtgctgcagGTTGTGGAGGAGAATGAGACTTTGCTTTCTTTCGCATTTTTTCTCAAGAAG
EST: GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAG GTTGTGGAGGAGAATGAGACTTTGCTTTCTTTCGCATTTTTTCTCAAGAAGEST: gi|208397201|gb|DC920581.1|DC920581
genomic: GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAGgtatgtcttt ... cgtgctgcagGTTGTGGAGGAGAATGAGACTTTGCTTTCTTTCGCATTTTTTCTCAAGAAG
EST: GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAG GTTGTGGAGGAGAATGAGACTTTGCTTTCTTTCGCATTTTTTCTCAAGAAG
genomic: GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAGgtatgtcttt ... cgtgctgcagGTTGTGGAGGAGAATGAGACTTTGCTTTCTTTCGCATTTTTTCTCAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGAGCTTGTTCCTGCTGTTGCACAACATTTTGCTGCCCAGgtatgtctttcagcacatcgttcttacattccatgttcaaattcacttcgatgatacatccagcataactccagttacttttaagcatgtcaactctcagactagtctttactttctttctttttctccacttttggttgtcacagttgccacgtgctgcag
- GGAGCT
- GAGCTT
- - - - - - - GCTGTT
- - - - - - - - - - - - - - - - TGCTGC