1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggggtgagggtgagaggttttttattgggaacgtgtgcatggatcccttgaactgctactgttgctggagcttgactagaaagtggctggaacaatgcagGGCTTTTGAGATTGGCGGTCGGCGTTGAGTGGGTGAGTGAGGTTGAGGGGATGATTGCGTGAGAAAAGATCGAGGCTTGTCTTCTGGTACTAGGATTCAC
species | Physcomitrella patens |
transcript | PP1S9_162V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCTCTCTTGAGTAGCGCTTAAACCCCGCTCGTGATAAATTCAGCTCTT GGCTTTTGAGATTGGCGGTCGGCGTTGAGTGGGTGAGTGAGGTTGAGGGGAEST: gi|18356455|gb|BJ188514.1|BJ188514
genomic: CTGCTCTCTTGAGTAGCGCTTAAACCCCGCTCGTGATAAATTCAGCTCTTgtaagtcgac ... aacaatgcagGGCTTTTGAGATTGGCGGTCGGCGTTGAGTGGGTGAGTGAGGTTGAGGGGA
EST: GCTCTCTTGAGTAGCGCTTAAACCCCGCTCGTGATAAATTCAGCTCTT GGCTTTTGAGATTGGCGGTCGGCGTTGAGTGGGTGAGTGAGGTTGAGGGGAEST: gi|100447259|gb|CJ971558.1|CJ971558
genomic: GCTCTCTTGAGTAGCGCTTAAACCCCGCTCGTGATAAATTCAGCTCTTgtaagtcgac ... aacaatgcagGGCTTTTGAGATTGGCGGTCGGCGTTGAGTGGGTGAGTGAGGTTGAGGGGA
EST: AAATTCAGCTCTT GGCTTTTGAGATTGGCGGTCGGCGTTGAGTGGGTGAGTGAGGTTGAGGGGAEST: gi|208370621|gb|DC936137.1|DC936137
genomic: AAATTCAGCTCTTgtaagtcgac ... aacaatgcagGGCTTTTGAGATTGGCGGTCGGCGTTGAGTGGGTGAGTGAGGTTGAGGGGA
EST: CTGCTCTCTTGAGTAGCGCTTAAACCCCGCTCGTGATAAATTCAGCTCTT GGCTTTTGAGATTGGCGGTCGGCGTTGAGTGGGTGAGTGAGGTTGAGGGGA
genomic: CTGCTCTCTTGAGTAGCGCTTAAACCCCGCTCGTGATAAATTCAGCTCTTgtaagtcgac ... aacaatgcagGGCTTTTGAGATTGGCGGTCGGCGTTGAGTGGGTGAGTGAGGTTGAGGGGA
ccttgaactgctactgttgctggagcttgactagaaagtggctggaacaatgcagGGCTTTTGAGATTGGCGGTCGGCGTTGAGTGGGTGAGTGAGGTTGAGGGGATGATTGCGTGAGAAAAGATCGAGGCTTGTCTTCTGGTACTAGGATTCAC
gcttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggtgagggtgagaggttttttattgggaacgtgtgcatggatcccttgaactgctactgttgctggagcttgactagaaagtggctggaacaatgcagGGCTTTTGAGATTGGCGGTCGGCGTTGAGTGGGTGAGTGAGGTTGAGGGGATGATTGCGTGAGAAAAGATCGAGGCTTGTCTTCTGGTACTAGGATTCAC
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