1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaggctgccaatttgagaccgttgagaagattgtcaaatttgaataaagatttgaatttgaatttgaaaaaaaaaattaattcgatatcaggcatcattgattttgttgatgataacgcggtagatgctctggcttccttacagttatacataaaagtaattgtaccctaaacgatttaatttggctcttttcagGTAAAGCAGTGGAGCTGATACAAGGTGTCCAAGCTTTTTACACCTACACAGCTGGATCCTGATTGATTTCAAGCTGGCAGGATATTTTTACGTCTGTTTC
species | Physcomitrella patens |
transcript | PP1S9_149V6.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGGTTCTCTTGCTG GTAAAGCAGTGGAGCTGATACAAGGTGTCCAAGCTTTTTACACCTACACAGEST: gi|37824145|gb|BJ582211.1|BJ582211
genomic: ACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGGTTCTCTTGCTGgtaaggctgc ... ctcttttcagGTAAAGCAGTGGAGCTGATACAAGGTGTCCAAGCTTTTTACACCTACACAG
EST: ACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGGTTCTCTTGCTG GTAAAGCAGTGGAGCTGATACAAGGTGTCCAAGCTTTTTACACCTACACAG
genomic: ACGTGTAGAAAAAACTCTAAAGCCTGTGCCTCTTTTTGGTTCTCTTGCTGgtaaggctgc ... ctcttttcagGTAAAGCAGTGGAGCTGATACAAGGTGTCCAAGCTTTTTACACCTACACAG
acagttatacataaaagtaattgtaccctaaacgatttaatttggctcttttcagGTAAAGCAGTGGAGCTGATACAAGGTGTCCAAGCTTTTTACACCTACACAGCTGGATCCTGATTGATTTCAAGCTGGCAGGATATTTTTACGTCTGTTTC
ctcttttc CT-rich tract
tatacataaaagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggctgccaatttgagaccgttgagaagattgtcaaatttgaataaagatttgaatttgaatttgaaaaaaaaaattaattcgatatcaggcatcattgattttgttgatgataacgcggtagatgctctggcttccttacagttatacataaaagtaattgtaccctaaacgatttaatttggctcttttcagGTAAAGCAGTGGAGCTGATACAAGGTGTCCAAGCTTTTTACACCTACACAGCTGGATCCTGATTGATTTCAAGCTGGCAGGATATTTTTACGTCTGTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG