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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgcagtcgtcgaatatcttacaactggtcaaaacattttgttataatgtactgggatatcacaggattgaatttcttcctttgcaccgaatgtggcagATCACGAGGAGGCAAGTGTTGTGGGCTCTCTATCTTATGCGGAGCCCTTTCTTCGATCTATACACACA

Basic information

species Physcomitrella patens
transcript PP1S9_149V6.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162190957|gb|FC368363.1|FC368363
EST:     GCAACAAATCAATACCCAGATGTGTTCCCTTCAAACAAGAGAAAAATGAG                         ATCACGAGGAGGCAAGTGTTGTGGGCTCTCTATCTTATGCGGAGCCCTTTC
genomic: GCAACAAATCAATACCCAGATGTGTTCCCTCCAAACAAGAGAAAAATGAGgtaagtagga ... aatgtggcagATCACGAGGAGGCAAGTGTTGTGGGCTCTCTATCTTATGCGGAGCCCTTTC
EST: gi|37824145|gb|BJ582211.1|BJ582211
EST:     GCAACAAATCAATACCCAGATGTGTTCCCTCCAAACAAGAGAAAAATGAG                         ATCACGAGGAGGCAAGTGTTGTGGGCTCTCTATCTTATGCGGAGCCCTTTC
genomic: GCAACAAATCAATACCCAGATGTGTTCCCTCCAAACAAGAGAAAAATGAGgtaagtagga ... aatgtggcagATCACGAGGAGGCAAGTGTTGTGGGCTCTCTATCTTATGCGGAGCCCTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgtactgggatatcacaggattgaatttcttcctttgcaccgaatgtggcagATCACGAGGAGGCAAGTGTTGTGGGCTCTCTATCTTATGCGGAGCCCTTTCTTCGATCTATACACACA
                      attgaattt  TA-rich tract