Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGGGTTACATCAGGCTGTTGAAGCCAAAGAAGGTGTTAAAATTCAAAATGAGACAGTCACACTTGCGTCCATCAGTTACCAAAACTTCTTCCTTCAGgtattgtaacgaaatcaccatcttcctacacaactggtagcaattgagtttccatagatttgttgccttcacgaatttaaatttaattcccgtttgcaca...

Basic information

species Physcomitrella patens
transcript PP1S9_141V6.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162257358|gb|FC433441.1|FC433441
EST:     ATGAGACAGTCACACTTGCGTCCATCAGTTACCAAAACTTCTTCCTTCAG                         TACCCCAAACTGTGCGGGATGACAGGAACTGCAGCCACTGAAGTTGACGAA
genomic: ATGAGACAGTCACACTTGCGTCCATCAGTTACCAAAACTTCTTCCTTCAGgtattgtaac ... gtgcttgcagTACCCCAAACTGTGCGGGATGACAGGAACTGCAGCCACTGAAGTTGACGAA
EST: gi|162172365|gb|FC348306.1|FC348306
EST:     CAAAACTTCTTCCTTCAG                         TACCCCAAACTGTGCGGGATGACAGGAACTGCAGCCACTGAAGTTGACGAA
genomic: CAAAACTTCTTCCTTCAGgtattgtaac ... gtgcttgcagTACCCCAAACTGTGCGGGATGACAGGAACTGCAGCCACTGAAGTTGACGAA