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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattctcaattccattaacaagattctggtacaatcttgacaataacttcttacgttaactaaactacaacaatgactaaacatggcatgttttctgaagGTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCAAGGCGAATTGACAATCAGGTAATTTTTCAGATATTAACTAGGAAAAAGC

Basic information

species Physcomitrella patens
transcript PP1S9_141V6.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162163004|gb|FC338394.1|FC338394
EST:     TAGCTATTCTGTCGGAGTACAAGACTTATACCGATGAAGAGAAGAAAAAG                         GTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCA
genomic: TAGCTATTCTGTCGGAGTACAAGACTTATACCGATGAAGAGAAGAAAAAGgtacatagcc ... ttttctgaagGTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcttacgttaactaaactacaacaatgactaaacatggcatgttttctgaagGTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCAAGGCGAATTGACAATCAGGTAATTTTTCAGATATTAACTAGGAAAAAGC
                             gactaaa  putative branch site (score: 2)
                                           tgttttct  putative PPT
          ttaactaaa  TA-rich tract