1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTGGGTGGGCGCGCTGCAGAAGAAGTTATTTTCGGTGACGCTGAAGTGACCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAGgtaagtgaatgcattgattgcatttgggagctttgtcaacttgtagcgataattgtctcgcaaacgattcgggcttccacaatttccttgttgataattgaatcaagtcaactgcttctgaagcaaacaaccccttggaacag
species | Physcomitrella patens |
transcript | PP1S9_115V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAG ATGGTGACGGCCTACGGCATGTCTGACATCGGCCCGTGGGCACTGATGGACEST: gi|162273610|gb|FC449339.1|FC449339
genomic: CCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAGgtaagtgaat ... cttggaacagATGGTGACGGCCTACGGCATGTCTGACATCGGCCCGTGGGCACTGATGGAC
EST: CCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAG ATGGTGACGGCCTACGGCATGTCTGACATCGGCCCGTGGGCACTGATGGACEST: gi|162194019|gb|FC370194.1|FC370194
genomic: CCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAGgtaagtgaat ... cttggaacagATGGTGACGGCCTACGGCATGTCTGACATCGGCCCGTGGGCACTGATGGAC
EST: CCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAG ATGGTGACGGCCTACGGCATGTCTGACATCGGCCCGTGGGCACTGATGGACEST: gi|162199338|gb|FC374017.1|FC374017
genomic: CCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAGgtaagtgaat ... cttggaacagATGGTGACGGCCTACGGCATGTCTGACATCGGCCCGTGGGCACTGATGGAC
EST: CCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAG ATGGTGACGGCCTACGGCATGTCTGACATCGGCCCGTGGGCACTGATGGACEST: gi|100375562|gb|BY948913.1|BY948913
genomic: CCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAGgtaagtgaat ... cttggaacagATGGTGACGGCCTACGGCATGTCTGACATCGGCCCGTGGGCACTGATGGAC
EST: CCACTGGCGCTTCCAGTGATTTGCAGCAAGCCTCTTCCATGGCGAAGCAG ATGGTGACGGCCTACGGCATGTCTGACATCGGCCCGTGGGCACTGATGGACEST: gi|162268413|gb|FC444182.1|FC444182
genomic: CCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAGgtaagtgaat ... cttggaacagATGGTGACGGCCTACGGCATGTCTGACATCGGCCCGTGGGCACTGATGGAC
EST: CCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAG ATGGTGACGGCCTACGGCATGTCTGACATCGGCCCGTGGGCACTGATGGAC
genomic: CCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAGgtaagtgaat ... cttggaacagATGGTGACGGCCTACGGCATGTCTGACATCGGCCCGTGGGCACTGATGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGGTGGGCGCGCTGCAGAAGAAGTTATTTTCGGTGACGCTGAAGTGACCACTGGCGCTTCCAGTGATTTGCAGCAAGTCTCTTCCATGGCGAAGCAGgtaagtgaatgcattgattgcatttgggagctttgtcaacttgtagcgataattgtctcgcaaacgattcgggcttccacaatttccttgttgataattgaatcaagtcaactgcttctgaagcaaacaaccccttggaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG