1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttatactatgttctgtgacacgatctttaccgtagctcttttttttctcactcgccgagtctccaatttctttacgctgaactttagatcagtgtgcctggagtagtatcagaatacatgatgcaacttcacatcgatgaaggtagtgttagtttgtgccaatgtaacgccttcttctgtctctcctgttcagGTCACTGTGGATGTTCCTGACGTGAAGGGCAGGACGGACATTCTGAAGGTACATGCCAGCAACAAGAAATTCGACGATGATGTGTCTCTTGACATCATTG
species | Physcomitrella patens |
transcript | PP1S9_115V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGATATACTTGATGCTGCTTTGCTGCGGCCCGGTCGCTTTGATCGTCAG GTCACTGTGGATGTTCCTGACGTGAAGGGCAGGACGGACATTCTGAAGGTAEST: gi|162194020|gb|FC370195.1|FC370195
genomic: CTGATATACTTGATGCTGCTTTGCTGCGGCCCGGTCGCTTTGATCGTCAGgttatactat ... tcctgttcagGTCACTGTGGATGTTCCTGACGTGAAGGGCAGGACGGACATTCTGAAGGTA
EST: CTGATATACTTGATGCTGCTTTGCTGCGGCCCGGTCGCTTTGATCGTCAG GTCACTGTGGATGTTCCTGACGTGAAGGGCAGGACGGACATTCTGAAGGTAEST: gi|100447243|gb|CJ971542.1|CJ971542
genomic: CTGATATACTTGATGCTGCTTTGCTGCGGCCCGGTCGCTTTGATCGTCAGgttatactat ... tcctgttcagGTCACTGTGGATGTTCCTGACGTGAAGGGCAGGACGGACATTCTGAAGGTA
EST: CTGATATACTTGATGCTGCTTTGCTGCGGCCCGGTCGCTTTGATCGTCAG GTCACTGTGGATGTTCCTGACGTGAAGGGCAGGACGGACATTCTGAAGGTAEST: gi|100375562|gb|BY948913.1|BY948913
genomic: CTGATATACTTGATGCTGCTTTGCTGCGGCCCGGTCGCTTTGATCGTCAGgttatactat ... tcctgttcagGTCACTGTGGATGTTCCTGACGTGAAGGGCAGGACGGACATTCTGAAGGTA
EST: CTGATATACTTGATGCTGCTTTGCTGCGGCCCGGTCGCTTTGATCGTCAG GTCACTGTGGATGTTCCTGACGTGAAGGGCAGGACGGACATTCTGAAGGTA
genomic: CTGATATACTTGATGCTGCTTTGCTGCGGCCCGGTCGCTTTGATCGTCAGgttatactat ... tcctgttcagGTCACTGTGGATGTTCCTGACGTGAAGGGCAGGACGGACATTCTGAAGGTA
gaaggtagtgttagtttgtgccaatgtaacgccttcttctgtctctcctgttcagGTCACTGTGGATGTTCCTGACGTGAAGGGCAGGACGGACATTCTGAAGGTACATGCCAGCAACAAGAAATTCGACGATGATGTGTCTCTTGACATCATTG
atgtaac putative branch site (score: 2)
cgccttcttctgtctc CT-rich tract
ttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatactatgttctgtgacacgatctttaccgtagctcttttttttctcactcgccgagtctccaatttctttacgctgaactttagatcagtgtgcctggagtagtatcagaatacatgatgcaacttcacatcgatgaaggtagtgttagtttgtgccaatgtaacgccttcttctgtctctcctgttcagGTCACTGTGGATGTTCCTGACGTGAAGGGCAGGACGGACATTCTGAAGGTACATGCCAGCAACAAGAAATTCGACGATGATGTGTCTCTTGACATCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA