Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcgcggcccttgatatgactcaaaagagaacggcgatactatatatatatatatatatatatatatgtatttatttatttttctttgtgtgtgtgtgtgtgtggcggaatcttgtaatttctcgtccaatggtacttattgtgtgacgttgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGGAAGGGAAGTTGCAACTCCCAACCTGTGATGGATACGTGGATTGCTCGAC

Basic information

species Physcomitrella patens
transcript PP1S9_107V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100440292|gb|BY962160.1|BY962160
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100452375|gb|CJ975239.1|CJ975239
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100405317|gb|BY955465.1|BY955465
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100363234|gb|BY984424.1|BY984424
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100393921|gb|BY953551.1|BY953551
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100410187|gb|BY974453.1|BY974453
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|162167130|gb|FC343606.1|FC343606
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100417558|gb|BY975541.1|BY975541
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100441893|gb|BY981116.1|BY981116
EST:     GGAATCTTCATCTGTTCAA-TTTGGCATGTCGGGCGCGTCTCTCATACTT                         CCTACAACAAGGGGCA-TGCACCTGTCTCGTC
genomic: GGAATCTTCATCTGT-CAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGG-CAATGCACCTGTCTCGTC
EST: gi|100404868|gb|BY991321.1|BY991321
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|162221372|gb|FC398533.1|FC398533
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100378133|gb|BY949697.1|BY949697
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|162218318|gb|FC394492.1|FC394492
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100353165|gb|BY945638.1|BY945638
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100375805|gb|BY968194.1|BY968194
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCCTACA-CAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCC-TACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCG
EST: gi|100412767|gb|BY974897.1|BY974897
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|162184387|gb|FC359133.1|FC359133
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|208358724|gb|DC935166.1|DC935166
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|208382155|gb|DC903129.1|DC903129
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100431034|gb|BY959994.1|BY959994
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|162223398|gb|FC400302.1|FC400302
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTACA-CCAATCGAGCGATCTCG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGT-CAACCAATCGAGCGATCTCG
EST: gi|100379980|gb|BY968786.1|BY968786
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100389068|gb|BY952272.1|BY952272
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100428822|gb|BY959451.1|BY959451
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|162268836|gb|FC445684.1|FC445684
EST:     AATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: AATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100412832|gb|BY992458.1|BY992458
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100399296|gb|BY954299.1|BY954299
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100419366|gb|BY957554.1|BY957554
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACAAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100388460|gb|BY952062.1|BY952062
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100447351|gb|CJ971650.1|CJ971650
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100354937|gb|BY964915.1|BY964915
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100405613|gb|BY973765.1|BY973765
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100431691|gb|BY960325.1|BY960325
EST:     GGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTTCTCTCATACTT                         CCTACAACA-GGGNCAATGCACCTTGTCT
genomic: GGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGT-CTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGG-CAATGCACCT-GTCT
EST: gi|100367258|gb|BY984863.1|BY984863
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100445730|gb|CJ970029.1|CJ970029
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100365956|gb|BY967223.1|BY967223
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100409955|gb|BY974337.1|BY974337
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCCTACA-CANGGGCA-TGCACCTGTCTCGTCAACCAATCGAGCGATCTCG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCC-TACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCG
EST: gi|208376876|gb|DC906831.1|DC906831
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100384266|gb|BY969397.1|BY969397
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100404095|gb|BY955252.1|BY955252
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|162235376|gb|FC412343.1|FC412343
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100358784|gb|BY946689.1|BY946689
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100371075|gb|BY985926.1|BY985926
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100434149|gb|BY978982.1|BY978982
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|162243243|gb|FC415595.1|FC415595
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100364958|gb|BY947994.1|BY947994
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|18327260|gb|BJ159262.1|BJ159262
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100451984|gb|CJ975041.1|CJ975041
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|100408638|gb|BY974218.1|BY974218
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|18327172|gb|BJ159174.1|BJ159174
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|162192595|gb|FC370642.1|FC370642
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|162205696|gb|FC380780.1|FC380780
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
EST: gi|162229915|gb|FC407277.1|FC407277
EST:     CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTT                         CCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG
genomic: CGGAATCTTCATCTGTCAAATTTGGCATGTCGGCCGCGTCTCTCATACTTgtaagctcgc ... tgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggaatcttgtaatttctcgtccaatggtacttattgtgtgacgttgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGGAAGGGAAGTTGCAACTCCCAACCTGTGATGGATACGTGGATTGCTCGAC
                                            ttgcctt  CT-rich tract
       ttgtaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagctcgcggcccttgatatgactcaaaagagaacggcgatactatatatatatatatatatatatatatgtatttatttatttttctttgtgtgtgtgtgtgtgtggcggaatcttgtaatttctcgtccaatggtacttattgtgtgacgttgccttgcagCCTACAACAAGGGCAATGCACCTGTCTCGTCAACCAATCGAGCGATCTCGGAAGGGAAGTTGCAACTCCCAACCTGTGATGGATACGTGGATTGCTCGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA