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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgccctgctgtgcaaaacgtggacattagttcttgaggttgctgatttcagctttagcgcgtttttagttctcatattctgtgctctgatttggcccagATTTGATGATACGAAATCTGAGCTAAGCCTACTCTCTTCCATGGCTTACGGTGACGTCTCAGTTGTGAGTATGATGCCTGAATTAACTAACTCTATTGAC

Basic information

species Physcomitrella patens
transcript PP1S99_86V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18362704|gb|BJ194775.1|BJ194775
EST:     ATTGACGTCGTCTCAGGTTTTCTTAATCAAGCTATTCCTGGAATAGTCAG                         ATTTGATGATACGAAATCTGAGCTAAGCCTACTCTCTTCCATGGCTTACGG
genomic: ATTGACGTCGTCTCAGGTTTTCTTAATCAAGCTATTCCTGGAATAGTCAGgtgaggaaac ... tttggcccagATTTGATGATACGAAATCTGAGCTAAGCCTACTCTCTTCCATGGCTTACGG
EST: gi|162169006|gb|FC345688.1|FC345688
EST:     ATTGACGTCGTCTCAGGTTTTCTTAATCAAGCTATTCCTGGAATAGTCAG                         ATTTGATGATACGAAATCTGAGCTAAGCCTACTCTCTTCCATGGCTTACGG
genomic: ATTGACGTCGTCTCAGGTTTTCTTAATCAAGCTATTCCTGGAATAGTCAGgtgaggaaac ... tttggcccagATTTGATGATACGAAATCTGAGCTAAGCCTACTCTCTTCCATGGCTTACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcagctttagcgcgtttttagttctcatattctgtgctctgatttggcccagATTTGATGATACGAAATCTGAGCTAAGCCTACTCTCTTCCATGGCTTACGGTGACGTCTCAGTTGTGAGTATGATGCCTGAATTAACTAACTCTATTGAC
                 tttttagtt  TA-rich tract