1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattcgatcaccgcccatttctatttgagaagtgttacttaggttggattgcagactgcacgattttggtgccccgatgttgtcagtttcttgtatgtagtgtttatttcaacgcttgcgtaactcgcttcatgtgcctgttgaccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCGCCATTTTATGACCCACTGGCTAATGTGGACGACGGATCCTGCCCATTCA
species | Physcomitrella patens |
transcript | PP1S99_42V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTNCA-GAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGEST: gi|162226251|gb|FC402959.1|FC402959
genomic: CTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATT-CAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTG
EST: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCGEST: gi|162195533|gb|FC371834.1|FC371834
genomic: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
EST: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCGEST: gi|162227790|gb|FC402705.1|FC402705
genomic: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
EST: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGG GGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
genomic: TCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGATTCAAGAAGGGgtattcgatc ... ccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCG
gtgtttatttcaacgcttgcgtaactcgcttcatgtgcctgttgaccttgttcagGGAGATCGGTGTGATTTGGATATTGTGCCTGGATGCACCGACCCGGAATCGCCATTTTATGACCCACTGGCTAATGTGGACGACGGATCCTGCCCATTCA
tgttgac putative branch site (score: 3)
ccttgttc CT-rich tract
tatttcaa TA-rich tract