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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCGGGCGCTGCAGCTTGTTGCAGCGCGGCATCGTCGAGCCATGAGGCTGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctggaactctgcttggtttagtggcagtggttttgctttggagcacttgggtccctcttggatttgctgtgctagtggatgagatgatgatat...

Basic information

species Physcomitrella patens
transcript PP1S99_42V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100440899|gb|BY962387.1|BY962387
EST:     TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTG                         TGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
genomic: TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctg ... ggtggtgcagTGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
EST: gi|100379974|gb|BY968783.1|BY968783
EST:     TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTG                         TGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
genomic: TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctg ... ggtggtgcagTGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
EST: gi|162195534|gb|FC371835.1|FC371835
EST:     TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTG                         TGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
genomic: TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctg ... ggtggtgcagTGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
EST: gi|208386797|gb|DC937189.1|DC937189
EST:     TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTG                         TGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
genomic: TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctg ... ggtggtgcagTGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
EST: gi|162257183|gb|FC433059.1|FC433059
EST:     TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTG                         TGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
genomic: TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctg ... ggtggtgcagTGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
EST: gi|100437064|gb|BY961333.1|BY961333
EST:     TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTG                         TGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
genomic: TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctg ... ggtggtgcagTGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
EST: gi|100427559|gb|BY977558.1|BY977558
EST:     TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTG                         TGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
genomic: TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctg ... ggtggtgcagTGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
EST: gi|100386075|gb|BY970014.1|BY970014
EST:     TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTG                         TGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
genomic: TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctg ... ggtggtgcagTGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
EST: gi|162159901|gb|FC336154.1|FC336154
EST:     TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTG                         TGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
genomic: TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctg ... ggtggtgcagTGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
EST: gi|162227790|gb|FC402705.1|FC402705
EST:     TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTG                         TGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
genomic: TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctg ... ggtggtgcagTGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
EST: gi|67508225|gb|BJ941096.1|BJ941096
EST:     TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTG                         TGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
genomic: TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctg ... ggtggtgcagTGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
EST: gi|100440507|gb|BY962234.1|BY962234
EST:     TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTG                         TGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT
genomic: TGCTGGGATCCGCCGACGGGCGACTAAGGCGTCGGTTGCGTCCAGTCTTGgtatatcctg ... ggtggtgcagTGTCACGTTTTTATGGATTGCAATTAGCAGCTGAAGGGAAAGTTGTGAGGT