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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggccatgttcatcatgaaatagtggaggttatgctcgactgtgtacatggaagtgggatcaatgtctgcgtttgatctgtggatctatttgaatgtgtagGGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTTCCGGACTCTGTCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGA

Basic information

species Physcomitrella patens
transcript PP1S99_42V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159901|gb|FC336154.1|FC336154
EST:     TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAG                         GGGCTTGCANAGGAGCTTGCACACG
genomic: TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAGgtaaactcat ... gaatgtgtagGGGCTTGCAAAGGAGCTTGCACACG
EST: gi|162257182|gb|FC433058.1|FC433058
EST:     TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAG                         GGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
genomic: TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAGgtaaactcat ... gaatgtgtagGGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
EST: gi|162195533|gb|FC371834.1|FC371834
EST:     TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAG                         GGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
genomic: TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAGgtaaactcat ... gaatgtgtagGGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
EST: gi|162226250|gb|FC402958.1|FC402958
EST:     TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAG                         GGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
genomic: TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAGgtaaactcat ... gaatgtgtagGGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
EST: gi|162226251|gb|FC402959.1|FC402959
EST:     TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAG                         GGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
genomic: TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAGgtaaactcat ... gaatgtgtagGGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
EST: gi|162257183|gb|FC433059.1|FC433059
EST:     TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAG                         GGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
genomic: TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAGgtaaactcat ... gaatgtgtagGGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
EST: gi|162227790|gb|FC402705.1|FC402705
EST:     TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAG                         GGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
genomic: TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAGgtaaactcat ... gaatgtgtagGGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
EST: gi|162195534|gb|FC371835.1|FC371835
EST:     TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAG                         GGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
genomic: TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAGgtaaactcat ... gaatgtgtagGGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
EST: gi|162207626|gb|FC384079.1|FC384079
EST:     GGCTTGCCTCAGAGCTACTTTGACGAG                         GGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
genomic: GGCTTGCCTCAGAGCTACTTTGACGAGgtaaactcat ... gaatgtgtagGGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
EST: gi|67508225|gb|BJ941096.1|BJ941096
EST:     TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAG                         GGGCTTGCAAAGGAGCTTGCAC
genomic: TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAGgtaaactcat ... gaatgtgtagGGGCTTGCAAAGGAGCTTGCAC
EST: gi|162227789|gb|FC402704.1|FC402704
EST:     TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAG                         GGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT
genomic: TGGAAGTACCTCAGAAGTTGAAAGGCTTGCCTCAGAGCTACTTTGACGAGgtaaactcat ... gaatgtgtagGGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catggaagtgggatcaatgtctgcgtttgatctgtggatctatttgaatgtgtagGGGCTTGCAAAGGAGCTTGCACACGAAGGAGCGTGCGAAAATGCAATCTTTCCGGACTCTGTCTATGTTCAAGATCGCTGCGTTTTCCCAGCAGGAATGA
                        gtttgat  putative branch site (score: 5)
                                        tatttgaat  TA-rich tract