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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACCAACTTGGGCAGACTTTGAGATGGGGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCTgtaagcatcgcaacatcttactattgctttaattgcatggatgttagtcgcttttatctatttgatgtcaaaaacttttgtataggtctggtatgtttggatcgaggacatatcacgatgatgtttaatgtaatttatttgtggcag

Basic information

species Physcomitrella patens
transcript PP1S99_42V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100440507|gb|BY962234.1|BY962234
EST:     GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCT                         GGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
genomic: GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCTgtaagcatcg ... tttgtggcagGGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
EST: gi|162159901|gb|FC336154.1|FC336154
EST:     GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCT                         GGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
genomic: GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCTgtaagcatcg ... tttgtggcagGGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
EST: gi|100427559|gb|BY977558.1|BY977558
EST:     GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCT                         GGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
genomic: GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCTgtaagcatcg ... tttgtggcagGGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
EST: gi|100386075|gb|BY970014.1|BY970014
EST:     GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCT                         GGACAACTGCTGACTATCTACTTTAATCCGTCTGCTTGCGAGCTGACACCT
genomic: GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCTgtaagcatcg ... tttgtggcagGGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
EST: gi|162257183|gb|FC433059.1|FC433059
EST:     GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCT                         GGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
genomic: GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCTgtaagcatcg ... tttgtggcagGGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
EST: gi|100379974|gb|BY968783.1|BY968783
EST:     GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCT                         GGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
genomic: GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCTgtaagcatcg ... tttgtggcagGGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
EST: gi|162227790|gb|FC402705.1|FC402705
EST:     GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCT                         GGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
genomic: GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCTgtaagcatcg ... tttgtggcagGGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
EST: gi|162195534|gb|FC371835.1|FC371835
EST:     GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCT                         GGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
genomic: GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCTgtaagcatcg ... tttgtggcagGGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
EST: gi|67508225|gb|BJ941096.1|BJ941096
EST:     GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCT                         GGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
genomic: GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCTgtaagcatcg ... tttgtggcagGGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
EST: gi|100440899|gb|BY962387.1|BY962387
EST:     GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCT                         GGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT
genomic: GGCTAGCTACCGTTTACTGGGAAACCAGCAATGGCCTACCACCAACTTCTgtaagcatcg ... tttgtggcagGGACAACTGCTGACTATCTACTTTAATCCGTCTGCTAGCGAGCTGACACCT