1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGGGATGTCGCTCTTGTGGAGCAGTTGGGGCTGAAATTGTTGTATGTCATGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCAAAgtacgctattgtgtcgaaaatgacttcacaaattcttgcgtcgaatttcttcatttgaaactattgtaaacagaacaaatcgtgctgggttgtgtaacca...
species | Physcomitrella patens |
transcript | PP1S99_229V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCNNN NNNNNGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAAEST: gi|18364447|gb|BJ196520.1|BJ196520
genomic: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCAAAgtacgctatt ... atcgacgcagAAAAAGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAA
EST: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCNNN NNNNNGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAAEST: gi|18360987|gb|BJ193051.1|BJ193051
genomic: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCAAAgtacgctatt ... atcgacgcagAAAAAGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAA
EST: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCNNN NNNNNGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAAEST: gi|208362752|gb|DC950552.1|DC950552
genomic: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCAAAgtacgctatt ... atcgacgcagAAAAAGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAA
EST: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCNNN NNNNNGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAAEST: gi|208394362|gb|DC904182.1|DC904182
genomic: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCAAAgtacgctatt ... atcgacgcagAAAAAGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAA
EST: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCNNN NNNNNGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAAEST: gi|100422429|gb|BY976369.1|BY976369
genomic: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCAAAgtacgctatt ... atcgacgcagAAAAAGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAA
EST: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCNNN NNNNNGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAAEST: gi|162167044|gb|FC342506.1|FC342506
genomic: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCAAAgtacgctatt ... atcgacgcagAAAAAGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAA
EST: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCNNN NNNNNGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAAEST: gi|100411668|gb|BY992279.1|BY992279
genomic: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCAAAgtacgctatt ... atcgacgcagAAAAAGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAA
EST: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCNNN NNNNNGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAAEST: gi|100391246|gb|BY971560.1|BY971560
genomic: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCAAAgtacgctatt ... atcgacgcagAAAAAGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAA
EST: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCNNN NNNNNGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAA
genomic: TGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCAAAgtacgctatt ... atcgacgcagAAAAAGATACCAGGAGTTAAATCAGCTATTTCAAGAGCAAGTGGTGCCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGGATGTCGCTCTTGTGGAGCAGTTGGGGCTGAAATTGTTGTATGTCATGAACACCCATGTACACGCAGATCATGTCACCGGCACTGGTCTTCTCAAAgtacgctattgtgtcgaaaatgacttcacaaattcttgcgtcgaatttcttcatttgaaactattgtaaacagaacaaatcgtgctgggttgtgtaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaacaaa