1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagttcttaatcatgacacatacatgggattctacctttagctgtcttctttgtgtttctttttattggttgaaatgcaccaactccctctctagcatctatctcccgaaattgattttcagttatgtgttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACATGCTGTGTGGTTTCCAAGATCCTGTGTAAACATATAGGGGGTGAATTGT
species | Physcomitrella patens |
transcript | PP1S99_229V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAGGAATTCAAACTCATAATGCAAA ATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACAEST: gi|162166627|gb|FC343519.1|FC343519
genomic: GAGGAATTCAAACTCATAATGCAAAgtaagttctt ... gttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
EST: GAGGAATTCAAACTCATAATGCAAA ATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTTTAACAEST: gi|162229837|gb|FC404290.1|FC404290
genomic: GAGGAATTCAAACTCATAATGCAAAgtaagttctt ... gttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
EST: GAGGAATTCAAACTCATAATGCAAA ATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACAEST: gi|208367799|gb|DC944045.1|DC944045
genomic: GAGGAATTCAAACTCATAATGCAAAgtaagttctt ... gttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
EST: GAGGAATTCAAACTCATAATGCAAA ATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACAEST: gi|15730199|gb|BI741729.1|BI741729
genomic: GAGGAATTCAAACTCATAATGCAAAgtaagttctt ... gttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
EST: GAGGAATTCAAACTCATAATGCAAA ATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACAEST: gi|162167043|gb|FC342505.1|FC342505
genomic: GAGGAATTCAAACTCATAATGCAAAgtaagttctt ... gttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
EST: GAGGAATTCAAACTCATAATGCAAA ATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACAEST: gi|37828787|gb|BJ586799.1|BJ586799
genomic: GAGGAATTCAAACTCATAATGCAAAgtaagttctt ... gttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
EST: GAGGAATTCAAACTCATAATGCAAA ATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACAEST: gi|7583079|gb|AW699243.1|AW699243
genomic: GAGGAATTCAAACTCATAATGCAAAgtaagttctt ... gttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
EST: GAGGAATTCAAACTCATAATGCAAA ATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACAEST: gi|208396585|gb|DC915897.1|DC915897
genomic: GAGGAATTCAAACTCATAATGCAAAgtaagttctt ... gttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
EST: GAGGAATTCAAACTCATAATGCAAA ATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACAEST: gi|208369415|gb|DC948181.1|DC948181
genomic: GAGGAATTCAAACTCATAATGCAAAgtaagttctt ... gttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
EST: GAGGAATTCAAACTCATAATGCAAA ATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACAEST: gi|37841726|gb|BJ599734.1|BJ599734
genomic: GAGGAATTCAAACTCATAATGCAAAgtaagttctt ... gttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
EST: GAGGAATTCAAACTCATAATGCAAA ATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACAEST: gi|208367777|gb|DC944023.1|DC944023
genomic: GAGGAATTCAAACTCATAATGCAAAgtaagttctt ... gttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
EST: GAGGAATTCAAACTCATAATGCAAA ATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
genomic: GAGGAATTCAAACTCATAATGCAAAgtaagttctt ... gttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACA
ctccctctctagcatctatctcccgaaattgattttcagttatgtgttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACATGCTGTGTGGTTTCCAAGATCCTGTGTAAACATATAGGGGGTGAATTGT
tgttgac putative branch site (score: 4)
aaattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcttaatcatgacacatacatgggattctacctttagctgtcttctttgtgtttctttttattggttgaaatgcaccaactccctctctagcatctatctcccgaaattgattttcagttatgtgttgacgcagATTTAGGGTTGCCTTACCCGAAGTTGATGGACGTGGCAGTTCCTTCTAACATGCTGTGTGGTTTCCAAGATCCTGTGTAAACATATAGGGGGTGAATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG