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gtaagtgctgaaattgtgcatgtttcctgttttagagaactctttagtgtagttaaaattatgtttgggatgaagttatgaattgctacgtgtttaacaatgacaacgatagtgatagttgttggtacgttgtgttattttggtgcatctgacaagttctacgagtgtccagTGTCGCAGCTCTGACGAGAGTGTTGAAAAGATCAAGTGGAGAGACCGGTGCCGAGAGCTTGCTTCACGAATTAGCTAGCTGGTGGCTGTTCGGCTGTGGG
species | Physcomitrella patens |
transcript | PP1S99_180V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGGAGTTTTGGATAGGTCGCGGGCTTCTCCAGATCCT TGTCGCAGCTCTGACGAGAGTGTTGAAAAGATCAAGTGGAGAGACCGGTGCEST: gi|208358918|gb|DC957662.1|DC957662
genomic: ATGTTGGAGTTTTGGATAGGTCGCGGGCTTCTCCAGATCCTgtaagtgctg ... gagtgtccagTGTCGCAGCTCTGACGAGAGTGTTGAAAAGATCAAGTGGAGAGACCGGTGC
EST: ATGTTGGAGTTTTGGATAGGTCGCGGGCTTCTCCAGATCCT TGTCGCAGCTCTGACGAGAGTGTTGAAAAGATCAAGTGGAGAGACCGGTGCEST: gi|208374931|gb|DC956369.1|DC956369
genomic: ATGTTGGAGTTTTGGATAGGTCGCGGGCTTCTCCAGATCCTgtaagtgctg ... gagtgtccagTGTCGCAGCTCTGACGAGAGTGTTGAAAAGATCAAGTGGAGAGACCGGTGC
EST: ATGTTGGAGTTTTGGATAGGTCGCGGGCTTCTCCAGATCCT TGTCGCAGCTCTGACGAGAGTGTTGAAAAGATCAAGTGGAGAGACCGGTGCEST: gi|37836701|gb|BJ594709.1|BJ594709
genomic: ATGTTGGAGTTTTGGATAGGTCGCGGGCTTCTCCAGATCCTgtaagtgctg ... gagtgtccagTGTCGCAGCTCTGACGAGAGTGTTGAAAAGATCAAGTGGAGAGACCGGTGC
EST: TTCTCCAGATCCT TGTCGCAGCTCTGACGAGAGTGTTGAAAAGATCAAGTGGAGAGACCGGTGC
genomic: TTCTCCAGATCCTgtaagtgctg ... gagtgtccagTGTCGCAGCTCTGACGAGAGTGTTGAAAAGATCAAGTGGAGAGACCGGTGC
gttgttggtacgttgtgttattttggtgcatctgacaagttctacgagtgtccagTGTCGCAGCTCTGACGAGAGTGTTGAAAAGATCAAGTGGAGAGACCGGTGCCGAGAGCTTGCTTCACGAATTAGCTAGCTGGTGGCTGTTCGGCTGTGGG
atctgac putative branch site (score: 5)
tgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgctgaaattgtgcatgtttcctgttttagagaactctttagtgtagttaaaattatgtttgggatgaagttatgaattgctacgtgtttaacaatgacaacgatagtgatagttgttggtacgttgtgttattttggtgcatctgacaagttctacgagtgtccagTGTCGCAGCTCTGACGAGAGTGTTGAAAAGATCAAGTGGAGAGACCGGTGCCGAGAGCTTGCTTCACGAATTAGCTAGCTGGTGGCTGTTCGGCTGTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT