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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATCGTTACTGCCGTCGGTGCCTTGTTGTGTTTGCTCGTTAATGCTATCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGTgtatgtcctccagtctcatttcttcgtgattctattttttttcttaatatccgtccgattctcatgcctcttctaaaaaccctaaacctacaatcacggt...

Basic information

species Physcomitrella patens
transcript PP1S99_180V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100388838|gb|BY988714.1|BY988714
EST:     TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGT                         GTTTTTGGTGGCATCCTACGTTGCTACACGATAGCCATCGCC
genomic: TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGTgtatgtcctc ... tgtgttgtagGTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCC
EST: gi|100358475|gb|BY983924.1|BY983924
EST:     TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGT                         GTTTTTGTTGGCATCC
genomic: TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGTgtatgtcctc ... tgtgttgtagGTTTTTGTTGGCATCC
EST: gi|18356584|gb|BJ188643.1|BJ188643
EST:     TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGT                         GTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCCATTTTAGTT
genomic: TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGTgtatgtcctc ... tgtgttgtagGTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCCATTTTAGTT
EST: gi|18351220|gb|BJ183271.1|BJ183271
EST:     TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGT                         GTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCCATTTTATTT
genomic: TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGTgtatgtcctc ... tgtgttgtagGTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCCATTTTAGTT
EST: gi|208358918|gb|DC957662.1|DC957662
EST:     TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGT                         GTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCCATTTTAGTT
genomic: TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGTgtatgtcctc ... tgtgttgtagGTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCCATTTTAGTT
EST: gi|100392032|gb|BY953188.1|BY953188
EST:     TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGT                         GTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCCATTTTAGTT
genomic: TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGTgtatgtcctc ... tgtgttgtagGTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCCATTTTAGTT
EST: gi|208374931|gb|DC956369.1|DC956369
EST:     TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGT                         GTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCCATTTTAGTT
genomic: TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGTgtatgtcctc ... tgtgttgtagGTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCCATTTTAGTT
EST: gi|100358426|gb|BY983899.1|BY983899
EST:     TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGT                         GTTTTTGTTGGCATCCTA
genomic: TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGTgtatgtcctc ... tgtgttgtagGTTTTTGTTGGCATCCTA
EST: gi|208389047|gb|DC937380.1|DC937380
EST:     TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCNACTACCGCGTCAGT                         GTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCCATTTTANTT
genomic: TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGTgtatgtcctc ... tgtgttgtagGTTTTTGTTGGCATCCTACGTTGCTACACGATAGCCATCGCCATTTTAGTT
EST: gi|18354509|gb|BJ186565.1|BJ186565
EST:     TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGT                         GTTTTTGTTGGCATCCTACGTTGCTACA
genomic: TCTCTCTTTTCCGGTCGTTCGATTACCGCGGCTTCGACTACCGCGTCAGTgtatgtcctc ... tgtgttgtagGTTTTTGTTGGCATCCTACGTTGCTACA