1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aagtgtgttcgatatccttgagtactctagacgttgtggtgcagttggtaaggtagtgcggtacaacaaagcttacagtgttgatgctgttggtttccagCAGGGAGATAGTTCCACAGTGTGGATCCAGGCTGCGATGCCTCGGGAGATGGGTCCCACAGGGACCATGCAGACGAGCTCATACTACAACTTAGCCGGAC
species | Physcomitrella patens |
transcript | PP1S99_168V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAATACATCGCACTACAAGGATAGTACTTTGTACATTCCGAGCCAGCAG CAGGGAGATAGTTCCACAGTGTGGATCCAGGCTGCGATGCCTCGGGAGATGEST: gi|162218389|gb|FC394771.1|FC394771
genomic: TGAATACATCGCACTACAAGGATAGTACTTTGTACATTCCGAGCCAGCAGgtaaggacta ... tggtttccagCAGGGAGATAGTTCCACAGTGTGGATCCAGGCTGCGATGCCTCGGGAGATG
EST: TGAATACATCGCACTACAAGGATAGTACTTTGTACATTCCGAGCCAGCAG CAGGGAGATAGTTCCACAGTGTGGATCCAGGCTGCGATGCEST: gi|162167333|gb|FC342321.1|FC342321
genomic: TGAATACATCGCACTACAAGGATAGTACTTTGTACATTCCGAGCCAGCAGgtaaggacta ... tggtttccagCAGGGAGATAGTTCCACAGTGTGGATCCAGGCTGCGATGC
EST: TTGTACATTCCGAGCCAGCAG CAGGGAGATAGTTCCACAGTGTGGATCCAGGCTGCGATGCCTCGGGAGATGEST: gi|162218388|gb|FC394770.1|FC394770
genomic: TTGTACATTCCGAGCCAGCAGgtaaggacta ... tggtttccagCAGGGAGATAGTTCCACAGTGTGGATCCAGGCTGCGATGCCTCGGGAGATG
EST: TGAATACATCGCATTACAAGGATAGTACTTTGTACATTCCGAGCCAGCAG CAGGGAGATAGTTCCACAGTGTGGATCCAGGCTGCGATGCCTCGGGAGATG
genomic: TGAATACATCGCACTACAAGGATAGTACTTTGTACATTCCGAGCCAGCAGgtaaggacta ... tggtttccagCAGGGAGATAGTTCCACAGTGTGGATCCAGGCTGCGATGCCTCGGGAGATG
tggtaaggtagtgcggtacaacaaagcttacagtgttgatgctgttggtttccagCAGGGAGATAGTTCCACAGTGTGGATCCAGGCTGCGATGCCTCGGGAGATGGGTCCCACAGGGACCATGCAGACGAGCTCATACTACAACTTAGCCGGAC
tttcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgtgttcgatatccttgagtactctagacgttgtggtgcagttggtaaggtagtgcggtacaacaaagcttacagtgttgatgctgttggtttccagCAGGGAGATAGTTCCACAGTGTGGATCCAGGCTGCGATGCCTCGGGAGATGGGTCCCACAGGGACCATGCAGACGAGCTCATACTACAACTTAGCCGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - tggtgca