1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGATCGGTTGTACCCCCCATATGTTCCAACAAACACAGCGAGCAAGTATTCTGGGAATGTTGGCCTTGTGGCAGCTCCATCGCTTTTATCATCTCAGGAGgtgggacttaggttttggaacgggaacggtgtggttatgatgatgctgaggggtagttgttgtgcgaggaatgtccgatgcttatgtgattgtgacacttgtatggttgtgcag
species | Physcomitrella patens |
transcript | PP1S99_168V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGGGAATGTTGGCCTTGTGGCAGCTCCATCGCTTTTATCATCTCAGGAG GGAGGCAATCCTATGCTAGCTTCCGCAGCTCCCAGCGTGAGTGCTGCGCAGEST: gi|162168023|gb|FC344337.1|FC344337
genomic: CTGGGAATGTTGGCCTTGTGGCAGCTCCATCGCTTTTATCATCTCAGGAGgtgggactta ... ggttgtgcagGGAGGCAATCCTATGCTAGCTTCCGCAGCTCCCAGCGTGAGTGCTGCGCAG
EST: GGAATGTTGGCCTTGTGGCAGCTCCATCGCTTTTATCATCTCAGGAG GGAGGCAATCCTATGCTAGCTTCCGCAGCTCCCAGCGTGAGTGCTGCGCAGEST: gi|162218389|gb|FC394771.1|FC394771
genomic: GGAATGTTGGCCTTGTGGCAGCTCCATCGCTTTTATCATCTCAGGAGgtgggactta ... ggttgtgcagGGAGGCAATCCTATGCTAGCTTCCGCAGCTCCCAGCGTGAGTGCTGCGCAG
EST: CTGGGAATGTTGGCCTTGTGGCAGCTCCATCGCTTTTATCATCTCAGGAG GGAGGCAATCCTATGCTAGCTTCCGCAGCTCCCAGCGTGAGTGCTGCGCAG
genomic: CTGGGAATGTTGGCCTTGTGGCAGCTCCATCGCTTTTATCATCTCAGGAGgtgggactta ... ggttgtgcagGGAGGCAATCCTATGCTAGCTTCCGCAGCTCCCAGCGTGAGTGCTGCGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATCGGTTGTACCCCCCATATGTTCCAACAAACACAGCGAGCAAGTATTCTGGGAATGTTGGCCTTGTGGCAGCTCCATCGCTTTTATCATCTCAGGAGgtgggacttaggttttggaacgggaacggtgtggttatgatgatgctgaggggtagttgttgtgcgaggaatgtccgatgcttatgtgattgtgacacttgtatggttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC