1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...taagttgcacatgaagcgtaactacttcattcaatttccaatcggcgggaattcgtgcttctcatgtatgtgctgattctttcccactttttccttgcagCTTCTTACTCCATTGAAAATATGTGCCAAAGCTGGAGCGTGCCTTGTAGAGGAAGGAACCTCAACAAG
species | Physcomitrella patens |
transcript | PP1S99_158V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAGTCGTTGACCAATATGCGGATTTCATCATTCAGATGCTCATGTCCAAG CTTCTTACTCCATTGAAAATATGTGCCAAAGCTGGAGCGTGCCTTGTAGAGEST: gi|100425574|gb|BY958664.1|BY958664
genomic: TAGTCGTTGACCAATATGCGGATTTCATCATCCAGATGCTCATGTCCAAGgtgattgata ... ttccttgcagCTTCTTACTCCATTGAAAATATGTGCCAAAGCTGGAGCGTGCCTTGTAGAG
EST: TAGTCGTTGACCAATATGCGGATTTCATCATCCAGATGCTCATGTCCAAG CTTCTTACTCCATTGAAAATATGTGCCAAAGCTGGAGCGTGCCTTGTAGAG
genomic: TAGTCGTTGACCAATATGCGGATTTCATCATCCAGATGCTCATGTCCAAGgtgattgata ... ttccttgcagCTTCTTACTCCATTGAAAATATGTGCCAAAGCTGGAGCGTGCCTTGTAGAG
cgggaattcgtgcttctcatgtatgtgctgattctttcccactttttccttgcagCTTCTTACTCCATTGAAAATATGTGCCAAAGCTGGAGCGTGCCTTGTAGAGGAAGGAACCTCAACAAG
tgctgat putative branch site (score: 9)
ctgattctttcccact CT-rich tract
attcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagttgcacatgaagcgtaactacttcattcaatttccaatcggcgggaattcgtgcttctcatgtatgtgctgattctttcccactttttccttgcagCTTCTTACTCCATTGAAAATATGTGCCAAAGCTGGAGCGTGCCTTGTAGAGGAAGGAACCTCAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -cacatga