1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...accaaacacagtatttattgacggatacttggtgcggatgaagcacagtgcagaacttgtgcaatttgatatgcaacctcttcattgtcatttgttgcagCTTTGTGAACGTCTTCCGAATCCAAATGGAGAATCCATGGTGGATTGCAATAGTTTATCATCAATGCCGGATGTTAGTTTCACCATTTCTGGCACGACAT
species | Physcomitrella patens |
transcript | PP1S99_158V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGCTGAGGAAGAATGGTACTCAAGCCCAAATCAAGGAACACTTGAACCAG CTTTGTGAACGTCTTCCGAATCCAAATGGAGAATCCATGGTGGATTGCAATEST: gi|162244335|gb|FC421013.1|FC421013
genomic: AGCTGAGGAAGAATGGTACTCAAGCCCAAATCAAGGAACACTTGAACCAGgtatcaatct ... tttgttgcagCTTTGTGAACGTCTTCCGAATCCAAATGGAGAATCCATGGTGGATTGCAAT
EST: AGCTGAGGAAGAATGGTACTCAAGCCCAAATCAAGGAACACTTGAACCAG CTTTGTGAACGTCTTCCGAATCCAAATGGAGAATCCATGGTGGATTGCAATEST: gi|162244336|gb|FC421014.1|FC421014
genomic: AGCTGAGGAAGAATGGTACTCAAGCCCAAATCAAGGAACACTTGAACCAGgtatcaatct ... tttgttgcagCTTTGTGAACGTCTTCCGAATCCAAATGGAGAATCCATGGTGGATTGCAAT
EST: AGCTGAGGAAGAATGGTACTCAAGCCCAAATCAAGGAACACTTGAACCAG CTTTGTGAACGTCTTCCGAATCCAAATGGAGAATCCATGGTGGATTGCAAT
genomic: AGCTGAGGAAGAATGGTACTCAAGCCCAAATCAAGGAACACTTGAACCAGgtatcaatct ... tttgttgcagCTTTGTGAACGTCTTCCGAATCCAAATGGAGAATCCATGGTGGATTGCAAT
cagtgcagaacttgtgcaatttgatatgcaacctcttcattgtcatttgttgcagCTTTGTGAACGTCTTCCGAATCCAAATGGAGAATCCATGGTGGATTGCAATAGTTTATCATCAATGCCGGATGTTAGTTTCACCATTTCTGGCACGACAT
atttgat putative branch site (score: 7)
aatttgatat TA-rich tract