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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTGGAAGGACTAGTATATCTTCACGAACAAGGTGTCATTCACCGTGATATTAAGGGCGCTAACATTCTTACGACCAAAGAGgtacactttagccaactacagttacttttatatatatatatatatatatatatatatatatatatatatatatacatagatatagatatatgtatttgtgtgtgaatggttgtggatttgtaagtcataaacctaaaatatgggtttgttgtatcag

Basic information

species Physcomitrella patens
transcript PP1S99_12V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S99_12V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os04g56530.1 (Oryza sativa), 5'ss of exon 6
GTCCTGGAAGGACTAGTATATCTTCACGAACAAGGTGTCATTCACCGTGATATTAAGGGCGCTAACATTCTTACGACCAAAGAGgtacactttagc----caactacagttacttttatatatatatatatatatatatatatatatatatatatatatatacatagatatagatatatgtatttgtgtgtgaatggttgtggatttgtaagtcataaacctaaaatatgggtttgttgtatcag
|| ||||||||||| || ||||||||||| ||||||||||| ||  | ||||| |||||||| || ||  | || |||||||||||  | |   ||    || | | | ||||   | |    ||   |  | |||  |  | |   |      ||  |||||| |  | | || | |||| ||||                                                           
GTGCTGGAAGGACTTGTTTATCTTCACGAGCAAGGTGTCATACATAGAGATATCAAGGGCGCAAATATATTGACTACCAAAGAGgtttattgctgcatcacatccatatttaccccttttgtgatgacttgagataattgcaaagggaatatcttaagtataca-aattttggaaaaatgt-tttg-----------------------------------------------------------

upper sequence: PP1S99_12V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G017654_T02 (Zea mays), 5'ss of exon 6
GTCCTGGAAGGACTAGTATATCTTCACGAACAAGGTGTCATTCACCGTGATATTAAGGGCGCTAACATTCTTACGACCAAAGAGgtacactttagccaactacagttacttttatatatatatatatatatatatatatatatatatatatatatatacatagatatagatatatgtatttgtgtgtgaatggttgtggatttgtaagtcataaacctaaaatatgggtttgttgtatcag
||  ||||||| || || ||||| || |||||||||||||||||  | ||||| |||||||| || || || || |||||||||||  |     |   | ||      |  || | | | | | |  ||   |  || |       || || | | |    | |  |||| || || ||   ||    ||                                                   
GTGTTGGAAGGTCTTGTTTATCTGCATGAACAAGGTGTCATTCATAGAGATATCAAGGGCGCAAATATACTGACTACCAAAGAGgttaatggctgtatattatctgcccccttttttctttgtttcaatcgttgaatttg-----gtaaattttttttggaacacctagaaatctgaatgc-tgctaaaa---------------------------------------------------

upper sequence: PP1S99_12V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ18166 (Selaginella moellendorffii), 5'ss of exon 6
GTCCTGGAAGGACTAGTATATCTTCACGAACAAGGTGTCATTCACCGTGATATTAAGGGCGCTAACATTCTTACGACCAAAGAGgtacactttagccaactacagttacttttatatatatatatatatatatatatatatatatatatatatatatacatagatatagatatatgtatttgtgtgtgaatggttgtggatttgtaagtcataaacctaaaatatgggtttgttgtatcag
||| |||||||||| | ||||||||| ||||||||||| |||||| | || |||||||| |||||||| || ||||| ||||||||      ||    |   ||||  |||   |    | || ||                                                                                                                   
GTCTTGGAAGGACTGGCATATCTTCATGAACAAGGTGTTATTCACAGAGACATTAAGGGGGCTAACATCCTCACGACGAAAGAGgtgtttactacttgagc-cagtggcttgcttgctaacatgtag------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S99_12V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ14289 (Selaginella moellendorffii), 5'ss of exon 5
-----------------GTCCTGGAAGGACTAGTATATCTT-CACGAACAAGGTGTCATTCACCGTGATATTAAGGGCGCTAACATTCTTACGAC-CAAAGAGgtacactttagccaactacagttacttttatatatatatatatatatatatatatatatatatatatatatatacatagatatagatatatgtatttgtgtgtgaatggttgtggatt-tgtaagtcataaacctaaaatatgggtttgttgtatcag
                 |   ||  | | | |  | || |  | |       | |||| |    |   |||  |  || |   |||   ||     ||||| ||    ||  |  | |          | ||  |   |     |||| |  ||  | |      |||  ||| | ||||  |    | || |  |  |   |    ||  | |||  | |   | || ||    | |    |       ||| |      
GAATGGTTCTCTGGCTAGCATTGTTAAGCCGAACAAATTTGGCGCATTTCCAGAGTCACTTGTTGCTGTATACATTGCTCAGGCATGTATAAATTACAAAgtggagtgcta-actcgatattcacaggtcttggaaggactggcatatcttcatgaacaaggtgttattcatagagacattaagggggcta-acatcctcacgacgaaagaggtgtttactacttgagccagtggcttgct-tgctaacatgtag------