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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcattttgtcctatccgtgtttaatcctcacggttgaatctcctttgcttggtaaacagcaattcctaggattggcctaagcagtattgtgcgatgcagGTCCTGGAAGGACTAGTATATCTTCACGAACAAGGTGTCATTCACCGTGATATTAAGGGCGCTAACATTCTTACGACCAAAGAG

Basic information

species Physcomitrella patens
transcript PP1S99_12V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S99_12V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os04g56530.1 (Oryza sativa), 3'ss of exon 5
gtcattttgtcctatccgtgtttaatcctcacggttgaatctcctttgcttggtaaacagcaattcctaggattggcctaagcagtattgtgcgatgcagGTCCTGGAAGGACTAGTATATCTTCACGAACAAGGTGTCATTCACCGTGATATTAAGGGCGCTAACATTCTTACGACCAAAGAG
                 |  | | ||  | ||     | | |||| |  ||| ||        |  |  | |||    |      ||     |||  ||||| ||||||||||| || ||||||||||| ||||||||||| ||  | ||||| |||||||| || ||  | || |||||||||
---------------gtgaatatgatgattacctgcaactttcctgtttttgcta--------tgtccggtattaattt---ttttacatatcgaaccagGTGCTGGAAGGACTTGTTTATCTTCACGAGCAAGGTGTCATACATAGAGATATCAAGGGCGCAAATATATTGACTACCAAAGAG

upper sequence: PP1S99_12V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ14289 (Selaginella moellendorffii), 3'ss of exon 5
---------------------------------------------gtcattttgtcctatccgtgtttaat-----cctcacggttga-atctcctttgcttggtaaacagcaattcctaggattggcctaagcagtattg-tgcgatgcagGTCCTGGAAGGACTAGTATATCTTCACGAACAAGGTGTCATTCACCGTGATA--TTAAG--GGCGCTAACATTCTTACGACCAAAGAG-------------
                                              || |  ||  | |   ||  || ||     | | | ||  |  | |  | |  |   | ||   |   || |||     | |    ||    ||| |   ||| ||  | |  | ||| | ||| | |||   ||    || ||    ||||    ||  | |||  | ||  |||| ||   |       | |             
gtggagtgctaactcgatattcacaggtcttggaaggactggcatatcttcatgaacaaggtgttattcatagagacattaagggggctaacatcctcacgacgaaagaggtgtttactacttgagccagtggcttgcttgctaacatgtagAGCTTTCAGGGATTCGTAAAACTTGCGGATTTTGGAGTTGC-CACCAAATTAACTGAAGCTGACGTGAACACTCACTCCGTTGTTGGGACTCCGTATTGGA

upper sequence: PP1S99_12V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ18166 (Selaginella moellendorffii), 3'ss of exon 5
gtcattttgtcctatccgtgtttaatcctcacggttgaatctcctttgctt-ggtaaacagcaattcctaggattggcctaagcagtattgtgcgat--gcagGTCCTGGAAGGACTAGTATATCTTCACGAACAAGGTGTCATTCACCGTGATATTAAGGGCGCTAACATTCTTACGACCAAAGAG
                                       | | | |||||  || |   |  |||| | | ||   |    ||   ||    |  ||   |||||| |||||||||| | ||||||||| ||||||||||| |||||| | || |||||||| |||||||| || ||||| ||||||
--------------------------------------gtatacattgctcaggcatgtataaattacaaagaagtg---gagtgctaactcgatattcacagGTCTTGGAAGGACTGGCATATCTTCATGAACAAGGTGTTATTCACAGAGACATTAAGGGGGCTAACATCCTCACGACGAAAGAG