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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTGCAGCCCATGCCGAACGATGTCTCCCATCTTTGCCAAGTTAAGCAAAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAGgtaccggcacgattgcttgtgacggagattgcccgttggtgttattggaaatgaagctgctcctcatatgtaattgatcaacacgtgttttataattgatgaccagtttaaatacaggttcatatagtcttctgtttcctctcgtttctttaagttcgtcgttatgttccaacggagtttttgttctttgactttgcag

Basic information

species Physcomitrella patens
transcript PP1S98_9V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162203546|gb|FC380462.1|FC380462
EST:     AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAG                         GATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
genomic: AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAGgtaccggcac ... gactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
EST: gi|37849696|gb|BJ607704.1|BJ607704
EST:     ATGTCGACAAAGTTCAG                         GATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
genomic: ATGTCGACAAAGTTCAGgtaccggcac ... gactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
EST: gi|162201227|gb|FC378462.1|FC378462
EST:     AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAG                         GATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
genomic: AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAGgtaccggcac ... gactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
EST: gi|162165368|gb|FC340843.1|FC340843
EST:     AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAG                         GATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
genomic: AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAGgtaccggcac ... gactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
EST: gi|37849499|gb|BJ607507.1|BJ607507
EST:     AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAG                         GATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
genomic: AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAGgtaccggcac ... gactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
EST: gi|162201228|gb|FC378463.1|FC378463
EST:     CTCGAGGTTGATGTCGACAAAGTTCAG                         GATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTGTCTTGTTTATC
genomic: CTCGAGGTTGATGTCGACAAAGTTCAGgtaccggcac ... gactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC