1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaccggcacgattgcttgtgacggagattgcccgttggtgttattggaaatgaagctgctcctcatatgtaattgatcaacacgtgttttataattgatgaccagtttaaatacaggttcatatagtcttctgtttcctctcgtttctttaagttcgtcgttatgttccaacggagtttttgttctttgactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATCAAGGATGGTAAACAAGTTGAGAGGCTTGTTGGGGCTAACGACGAACTCG
species | Physcomitrella patens |
transcript | PP1S98_9V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAG GATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATCEST: gi|37849696|gb|BJ607704.1|BJ607704
genomic: AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAGgtaccggcac ... gactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
EST: ATGTCGACAAAGTTCAG GATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATCEST: gi|162201227|gb|FC378462.1|FC378462
genomic: ATGTCGACAAAGTTCAGgtaccggcac ... gactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
EST: AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAG GATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATCEST: gi|162165368|gb|FC340843.1|FC340843
genomic: AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAGgtaccggcac ... gactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
EST: AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAG GATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATCEST: gi|37849499|gb|BJ607507.1|BJ607507
genomic: AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAGgtaccggcac ... gactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
EST: AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAG GATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATCEST: gi|162201228|gb|FC378463.1|FC378463
genomic: AAGAGTACTCCGACATGGTTTTCCTCGAGGTTGATGTCGACAAAGTTCAGgtaccggcac ... gactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
EST: CTCGAGGTTGATGTCGACAAAGTTCAG GATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTGTCTTGTTTATC
genomic: CTCGAGGTTGATGTCGACAAAGTTCAGgtaccggcac ... gactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATC
tttctttaagttcgtcgttatgttccaacggagtttttgttctttgactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATCAAGGATGGTAAACAAGTTGAGAGGCTTGTTGGGGCTAACGACGAACTCG
ctttgac putative branch site (score: 4)
ttctttg CT-rich tract
tttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccggcacgattgcttgtgacggagattgcccgttggtgttattggaaatgaagctgctcctcatatgtaattgatcaacacgtgttttataattgatgaccagtttaaatacaggttcatatagtcttctgtttcctctcgtttctttaagttcgtcgttatgttccaacggagtttttgttctttgactttgcagGATGTCACAGCTAAGTATGAGGTTCTTGCCATGCCAACTTTCTTGTTTATCAAGGATGGTAAACAAGTTGAGAGGCTTGTTGGGGCTAACGACGAACTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG