1 5' 3' | 2 5' 3' | 3 5' 3' |
GAGACCAGCAAAATCTAATAAGCACGGAAATGTTATCGTCATAAAGAACGCGAAAGGTTTGGAGAATAAGCTGAACGAAGCTAAGGCCGCTGGTAAAATTgtaagagcgatgccatcttttccttctctccttgcgctacttttttttggtgtcattttgcaattatttttgtattctttggcgtgccagagttgtgctattgagcgaatgccgtggcttacaaaatcattatcacttgctgataattcggttacctcacag
species | Physcomitrella patens |
transcript | PP1S98_9V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGAAAGGTTTGGAGAATAAGCTGAACGAAGCTAAGGCCGCTGGTAAAATT ATTGTCGTCGATTTTACTGCTACTTGGTGCAGCCCATGCCGAACGATGTCTEST: gi|162201227|gb|FC378462.1|FC378462
genomic: CGAAAGGTTTGGAGAATAAGCTGAACGAAGCTAAGGCCGCTGGTAAAATTgtaagagcga ... tacctcacagATTGTCGTCGATTTTACTGCTACTTGGTGCAGCCCATGCCGAACGATGTCT
EST: CGAAAGGTTTGGAGAATAAGCTGAACGAAGCTAAGGCCGCTGGTAAAATT ATTGTCGTCGATTTTACTGCTACTTGGTGCAGCCCATGCCGAACGATGTCTEST: gi|162203547|gb|FC380463.1|FC380463
genomic: CGAAAGGTTTGGAGAATAAGCTGAACGAAGCTAAGGCCGCTGGTAAAATTgtaagagcga ... tacctcacagATTGTCGTCGATTTTACTGCTACTTGGTGCAGCCCATGCCGAACGATGTCT
EST: CGAAAGGTTTGGAGAATAAGCTGAACGAAGCTAAGGCCGCTGGTAAAATT ATTGTCGTCGATTTTACTGCTACTTGGTGCAGCCCATGCCGAACGATGTCTEST: gi|162165368|gb|FC340843.1|FC340843
genomic: CGAAAGGTTTGGAGAATAAGCTGAACGAAGCTAAGGCCGCTGGTAAAATTgtaagagcga ... tacctcacagATTGTCGTCGATTTTACTGCTACTTGGTGCAGCCCATGCCGAACGATGTCT
EST: CGAAAGGTTTGGAGAATAAGCTGAACGAAGCTAAGGCCGCTGGTAAAATT ATTGTCGTCGATTTTACTGCTACTTGGTGCAGCCCATGCCGAACGATGTCTEST: gi|37849499|gb|BJ607507.1|BJ607507
genomic: CGAAAGGTTTGGAGAATAAGCTGAACGAAGCTAAGGCCGCTGGTAAAATTgtaagagcga ... tacctcacagATTGTCGTCGATTTTACTGCTACTTGGTGCAGCCCATGCCGAACGATGTCT
EST: CGAAAGGTTTGGAGAATAAGCTGAACGAAGCTAAGGCCGCTGGTAAAATT ATTGTCGTCGATTTTACTGCTACTTGGTGCAGCCCATGCCGAACGATGTCT
genomic: CGAAAGGTTTGGAGAATAAGCTGAACGAAGCTAAGGCCGCTGGTAAAATTgtaagagcga ... tacctcacagATTGTCGTCGATTTTACTGCTACTTGGTGCAGCCCATGCCGAACGATGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGACCAGCAAAATCTAATAAGCACGGAAATGTTATCGTCATAAAGAACGCGAAAGGTTTGGAGAATAAGCTGAACGAAGCTAAGGCCGCTGGTAAAATTgtaagagcgatgccatcttttccttctctccttgcgctacttttttttggtgtcattttgcaattatttttgtattctttggcgtgccagagttgtgctattgagcgaatgccgtggcttacaaaatcattatcacttgctgataattcggttacctcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA