1 5' 3' | 2 5' 3' | 3 5' 3' |
...taagctggaatttcgtggcccaaatcgtcacagggtttggtgtggcattgtctcatgctgttcgccgaactctgataacctgcgattctcctttttgcagCAACACCATCGAAAACAGAAACACTATCGACAGCAGAAGCACCATCGACGACAGAAGCACCATCGACGACTGAAGCACCATCGACAACTGAAGCACCATC
species | Physcomitrella patens |
transcript | PP1S98_9V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCAGTGGAAATCGCGATCGTGTTGACCGGNNNNNNNCAGACAATCCAG CAACACCATCGAAAACAGAAACACTATCGACAGCAGAAGCACCATCGACGAEST: gi|162201227|gb|FC378462.1|FC378462
genomic: TTTCAGTGGAAATCGCGATCGTGTTGACCGGAAAAAAACAGACAATCCAGgtttaggtct ... ctttttgcagCAACACCATCGAAAACAGAAACACTATCGACAGCAGAAGCACCATCGACGA
EST: TTTCAGTGGAAATCGCGATCGTGTTGACCGGNNNNNNNCAGACAATCCAG CAACACCATCGAAAACAGAAACACTATCGACAGCAGAAGCACCATCGACGAEST: gi|162203547|gb|FC380463.1|FC380463
genomic: TTTCAGTGGAAATCGCGATCGTGTTGACCGGAAAAAAACAGACAATCCAGgtttaggtct ... ctttttgcagCAACACCATCGAAAACAGAAACACTATCGACAGCAGAAGCACCATCGACGA
EST: TTTCAGTGGAAATCGCGATCGTGTTGACCGGNNNNNNNCAGACAATCCAG CAACACCATCGAAAACAGAAACACTATCGACAGCAGAAGCACCATCGACGAEST: gi|18375405|gb|BJ206983.1|BJ206983
genomic: TTTCAGTGGAAATCGCGATCGTGTTGACCGGAAAAAAACAGACAATCCAGgtttaggtct ... ctttttgcagCAACACCATCGAAAACAGAAACACTATCGACAGCAGAAGCACCATCGACGA
EST: TTTCAGTGGAAATCGCGATCGTGTTGACCGGNNNNNNNCAGACAATCCAG CAACACCATCGAAAACAGAAACACTATCGACAGCAGAAGCACCATCGACGA
genomic: TTTCAGTGGAAATCGCGATCGTGTTGACCGGAAAAAAACAGACAATCCAGgtttaggtct ... ctttttgcagCAACACCATCGAAAACAGAAACACTATCGACAGCAGAAGCACCATCGACGA
cattgtctcatgctgttcgccgaactctgataacctgcgattctcctttttgcagCAACACCATCGAAAACAGAAACACTATCGACAGCAGAAGCACCATCGACGACAGAAGCACCATCGACGACTGAAGCACCATCGACAACTGAAGCACCATC
tgataac putative branch site (score: 2)
ttctcctttttgc putative PPT
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagctggaatttcgtggcccaaatcgtcacagggtttggtgtggcattgtctcatgctgttcgccgaactctgataacctgcgattctcctttttgcagCAACACCATCGAAAACAGAAACACTATCGACAGCAGAAGCACCATCGACGACAGAAGCACCATCGACGACTGAAGCACCATCGACAACTGAAGCACCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC