1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTAGCTAAGAAGCAGAGCATTGATGAATTCGTGAGAGTTGCAAACGCCAAAGCAGCTCCCATCGAGGAGTTTCCCTCTTTTCTCAAATACGAAAGGAATGgtaggtgagccgcttattccggctgtttttggcgttccaagctttcaactgacacttccatggtcttctctgcatttttgatgcctttccttttctgctg...
species | Physcomitrella patens |
transcript | PP1S98_98V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCAGCTCCCATCGAGGAGTTTCCCTCTTTTCTCAAATACGAAAGGAATG GCTTGAATTTGATCATGGAGGCAGGACGCGGTGATTCTTTGTCCCCTCCAGEST: gi|162279489|gb|FC455605.1|FC455605
genomic: AGCAGCTCCCATCGAGGAGTTTCCCTCTTTTCTCAAATACGAAAGGAATGgtaggtgagc ... tatctcgtagGCTTGAATTTGATCATGGAGGCAGGACGCGGTGATTCTTTGTCCCCTCCAG
EST: AGCAGCTCCCATCGAGGAGTTTCCCTCTTTTCTCAAATACGAAAGGAATG GCTTGAATTTGATCATGGAGGCAGGACGCGGTGATTCTTTGTCCCCTCCAGEST: gi|162245726|gb|FC420744.1|FC420744
genomic: AGCAGCTCCCATCGAGGAGTTTCCCTCTTTTCTCAAATACGAAAGGAATGgtaggtgagc ... tatctcgtagGCTTGAATTTGATCATGGAGGCAGGACGCGGTGATTCTTTGTCCCCTCCAG
EST: AGCAGCTCCCATCGAGGAGTTTCCCTCTTTTCTCAAATACGAAAGGAATG GCTTGAATTTGATCATGGAGGCAGGACGCGGTGATTCTTTGTCCCCTCCAGEST: gi|162227714|gb|FC402668.1|FC402668
genomic: AGCAGCTCCCATCGAGGAGTTTCCCTCTTTTCTCAAATACGAAAGGAATGgtaggtgagc ... tatctcgtagGCTTGAATTTGATCATGGAGGCAGGACGCGGTGATTCTTTGTCCCCTCCAG
EST: AGCAGCTCCCATCGAGGAGTTTCCCTCTTTTCTCAAATACGAAAGGAATGGTAG
genomic: AGCAGCTCCCATCGAGGAGTTTCCCTCTTTTCTCAAATACGAAAGGAA---T-Ggtaggtgagc ... tatctcg
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAGCTAAGAAGCAGAGCATTGATGAATTCGTGAGAGTTGCAAACGCCAAAGCAGCTCCCATCGAGGAGTTTCCCTCTTTTCTCAAATACGAAAGGAATGgtaggtgagccgcttattccggctgtttttggcgttccaagctttcaactgacacttccatggtcttctctgcatttttgatgcctttccttttctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA