1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCGGTAGAATCCATCGGAAAGAGGACGATAGACTTGTGATTGAAGACCCATGGATCGTAAGAAGCAGTCCAGCAAAGAGAAAAAGCTCAAGCGGAAAGAGgttctcttactttcaaaccttgcgccctgttgatttttgtgaactgtgattgagcatctttccttgtgatgaaatcgattgggaccggtatggtgtaatc...
species | Physcomitrella patens |
transcript | PP1S98_98V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGATCGTAAGAAGCAGTCCAGCAAAGAGAAAAAGCTCAAGCGGAAAGAG GAGCTAGCTAAGAAGCAGAGCATTGATGAATTCGTGAGAGTTGCAAACGCCEST: gi|162245726|gb|FC420744.1|FC420744
genomic: TGGATCGTAAGAAGCAGTCCAGCAAAGAGAAAAAGCTCAAGCGGAAAGAGgttctcttac ... ttactatcagGAGCTAGCTAAGAAGCAGAGCATTGATGAATTCGTGAGAGTTGCAAACGCC
EST: TGGATCGTAAGAAGCAGTCCAGCAAAGAGAAAAAGCTCAAGCGGAAAGAG GAGCTAGCTAAGAAGCAGAGCATTGATGAATTCGTGAGAGTTGCAAACGCCEST: gi|162227714|gb|FC402668.1|FC402668
genomic: TGGATCGTAAGAAGCAGTCCAGCAAAGAGAAAAAGCTCAAGCGGAAAGAGgttctcttac ... ttactatcagGAGCTAGCTAAGAAGCAGAGCATTGATGAATTCGTGAGAGTTGCAAACGCC
EST: TGGATCGTAAGAAGCAGTCCAGCAAAGAGAAAAAGCTCAAGCGGAAAGAG GAGCTAGCTAAGAAGCAGAGCATTGATGAATTCGTGAGAGTTGCAAACGCC
genomic: TGGATCGTAAGAAGCAGTCCAGCAAAGAGAAAAAGCTCAAGCGGAAAGAGgttctcttac ... ttactatcagGAGCTAGCTAAGAAGCAGAGCATTGATGAATTCGTGAGAGTTGCAAACGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGTAGAATCCATCGGAAAGAGGACGATAGACTTGTGATTGAAGACCCATGGATCGTAAGAAGCAGTCCAGCAAAGAGAAAAAGCTCAAGCGGAAAGAGgttctcttactttcaaaccttgcgccctgttgatttttgtgaactgtgattgagcatctttccttgtgatgaaatcgattgggaccggtatggtgtaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA