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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAGCATTATACGTGTATGAAATCCAAGTGGAACAAGCTGTGCAAGGGAAGGGGCTTGGCAAGTTTTTGATGCAGTTTCTTGAGTTGATTGCCCGCAAGgttggctgtctaaccctctgtaggtctaacctttcatcaagtttttagttatttctctcatttaagaccatagcttcataaacttgttaattctgcatacctttttggatgcgaagaccggagcgtccataagtagaaccagctgccttgttgctatttgattgctagaatgcctcctattttttgctgtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S98_98V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37826808|gb|BJ584820.1|BJ584820
EST:     AGGGGCTTGNCAAGTTTTTGATGCAGTTTCTTGAGTTGATTGCCCGCAAG                         AACGGTATGAAAGCAATGCTCCTGACCTTGCAAAAAAGGAACGTTCGGGCT
genomic: AGGGGCTTGGCAAGTTTTTGATGCAGTTTCTTGAGTTGATTGCCCGCAAGgttggctgtc ... ctgtgtgcagAACGGTATGAAAGCAATGCTCCTGACCTTGCAAAAAAGGAACGTTCGGGCT
EST: gi|162279489|gb|FC455605.1|FC455605
EST:     AGGGGCTTGGCAAGTTTTTGATGCAGTTTCTTGAGTTGATTGCCCGCAAG                         AACGGTATGAAAGCAATGCTCCTGACCTTGCAAAAAAGGAACGTTCGGGCT
genomic: AGGGGCTTGGCAAGTTTTTGATGCAGTTTCTTGAGTTGATTGCCCGCAAGgttggctgtc ... ctgtgtgcagAACGGTATGAAAGCAATGCTCCTGACCTTGCAAAAAAGGAACGTTCGGGCT
EST: gi|162245725|gb|FC420743.1|FC420743
EST:     TTGATGCAGTTTCTTGAGTTGATTGCCCGCAAG                         AACGGTATGAAAGCAATGCTCCTGACCTTGCAAAAAAGGAACGTTCGGGCT
genomic: TTGATGCAGTTTCTTGAGTTGATTGCCCGCAAGgttggctgtc ... ctgtgtgcagAACGGTATGAAAGCAATGCTCCTGACCTTGCAAAAAAGGAACGTTCGGGCT
EST: gi|162227713|gb|FC402667.1|FC402667
EST:     AGGGGCTTGGCAAGTTTTTGATGCAGTTTCTTGAGTTGATTGCCCGCAAG                         AACGGTATGAAAGCAATGCTCCTGACCTTGCAAAAAAGGAACGTTCGGGCT
genomic: AGGGGCTTGGCAAGTTTTTGATGCAGTTTCTTGAGTTGATTGCCCGCAAGgttggctgtc ... ctgtgtgcagAACGGTATGAAAGCAATGCTCCTGACCTTGCAAAAAAGGAACGTTCGGGCT