1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttacacttcgtccgtaagccttgagaaacagtcaatcaattgattctggtttcattttcttgttctctgccgcacaggaactctcatagtgctcgctaatctctgatgggaacgaccttttttgcgcagagcagGTAAATATGGAGGAGCCATATGGTCCTGAAGAATGGCCTGCGGAGGAGAAGAACAAGCGTCGTGAAATGGTATCGCCAGATGCACGCTACATTTTCGTCA
species | Physcomitrella patens |
transcript | PP1S98_98V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGATTCTTTGTCCCCTCCAGTGAAGCAATACGTTCAGACTCTGCTAAAG GTAAATATGGAGGAGCCATATGGTCCTGAAGAATGGCCTGCGGAGGAGAAGEST: gi|162227713|gb|FC402667.1|FC402667
genomic: GTGATTCTTTGTCCCCTCCAGTGAAGCAATACGTTCAGACTCTGCTAAAGgttacacttc ... cgcagagcagGTAAATATGGAGGAGCCATATGGTCCTGAAGAATGGCCTGCGGAGGAGAAG
EST: AGTGAAGCAATACGTTCAGACTCTGCTAAAG GTAAATATGGAGGAGCCATATGGTCCTGAAGAATGGCCTGCGGAGGAGAAG
genomic: AGTGAAGCAATACGTTCAGACTCTGCTAAAGgttacacttc ... cgcagagcagGTAAATATGGAGGAGCCATATGGTCCTGAAGAATGGCCTGCGGAGGAGAAG
actctcatagtgctcgctaatctctgatgggaacgaccttttttgcgcagagcagGTAAATATGGAGGAGCCATATGGTCCTGAAGAATGGCCTGCGGAGGAGAAGAACAAGCGTCGTGAAATGGTATCGCCAGATGCACGCTACATTTTCGTCA
ccttttttgc CT-rich tract
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttacacttcgtccgtaagccttgagaaacagtcaatcaattgattctggtttcattttcttgttctctgccgcacaggaactctcatagtgctcgctaatctctgatgggaacgaccttttttgcgcagagcagGTAAATATGGAGGAGCCATATGGTCCTGAAGAATGGCCTGCGGAGGAGAAGAACAAGCGTCGTGAAATGGTATCGCCAGATGCACGCTACATTTTCGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG